C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080893 Krt17-001 ENSMUSG00000035557 10090 - 11:100256217-100261029 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080893
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080893 1.602±0.09 0.258±0.05 0.986±0.80 17.373±7.18 7.857±0.67 0.311±0.04 0.032±0.02 0.142±0.06 0.270±0.06 0.545±0.24 0.621±0.30 0.316±0.25 0.045±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_0016 CGP 11:100246091-100261029
CIL_00056U CIL_00056U_000X CGP 11:100256217-100269871

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002009 IGI morphogenesis of an epithelium
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005882 IEA intermediate filament
GO:0007165 IEA signal transduction
GO:0030307 IMP positive regulation of cell growth
GO:0031424 IGI keratinization
GO:0032395 IEA MHC class II receptor activity
GO:0042289 IEA MHC class II protein binding
GO:0045109 IGI intermediate filament organization
GO:0045727 IMP positive regulation of translation
GO:0051798 IMP positive regulation of hair follicle development
GO:0070062 IEA extracellular vesicular exosome
GO:0071944 IDA cell periphery

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000167586 KRT14-001 protein_coding Homo_sapiens 0 1120
ENST00000251643 KRT12-001 protein_coding Homo_sapiens 0 313
ENST00000254043 KRT15-001 protein_coding Homo_sapiens 0 662
ENST00000300992 KRT17P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1495
ENST00000301653 KRT16-001 protein_coding Homo_sapiens 0 918
ENST00000311208 KRT17-001 protein_coding Homo_sapiens 0 1736
ENST00000312150 KRT25-001 protein_coding Homo_sapiens 4e-24 117
ENST00000326333 KRT17P2-002 processed_transcript Homo_sapiens 0 678
ENST00000361566 KRT19-001 protein_coding Homo_sapiens 0 566
ENST00000393974 KRT15-004 protein_coding Homo_sapiens 0 507
ENST00000393976 KRT15-007 protein_coding Homo_sapiens 0 662
ENST00000398469 KRT42P-002 processed_transcript Homo_sapiens 0 337
ENST00000399124 KRT16P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 725
ENST00000399211 KRT17P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1450
ENST00000414673 KRT16P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 747
ENST00000415349 KRT18P39-001 processed_pseudogene Homo_sapiens 0.0000000008 69
ENST00000417510 KRT16P6-002 processed_transcript Homo_sapiens 0 682
ENST00000420566 KRT17P3-001 unprocessed_pseudogene Homo_sapiens 0 1487
ENST00000425692 KRT16P6-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 983
ENST00000427733 KRT18P27-001 processed_pseudogene Homo_sapiens 0.000002 58
ENST00000436075 KRT18P5-001 processed_pseudogene Homo_sapiens 0.000000000001 79
ENST00000438131 KRT42P-001 processed_transcript Homo_sapiens 2e-33 148
ENST00000439127 KRT16P3-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 654
ENST00000441550 KRT14-002 retained_intron Homo_sapiens 0 276
ENST00000453795 KRT17P6-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 780
ENST00000455284 KRT16P5-001 processed_pseudogene Homo_sapiens 1e-38 163
ENST00000455635 KRT19-002 protein_coding Homo_sapiens 0 278
ENST00000458290 KRT15-006 protein_coding Homo_sapiens 0 418
ENST00000458343 KRT42P-003 transcribed_unprocessed_pseudogene Homo_sapiens 0 337
ENST00000463128 KRT17-002 protein_coding Homo_sapiens 0 785
ENST00000468880 KRT19-005 retained_intron Homo_sapiens 0 274
ENST00000470335 KLHL22-005 processed_transcript Homo_sapiens 0.00000002 64
ENST00000474031 KRT15-008 retained_intron Homo_sapiens 0 507
ENST00000476662 KRT14-003 retained_intron Homo_sapiens 0 852
ENST00000479031 KRT19-004 retained_intron Homo_sapiens 0 230
ENST00000491673 KRT17-004 retained_intron Homo_sapiens 0 621
ENST00000493253 KRT17-003 retained_intron Homo_sapiens 0 861
ENST00000540235 KRT17-201 protein_coding Homo_sapiens 0 1336
ENST00000572470 KRT12-001 protein_coding Homo_sapiens 0 313
ENST00000577449 KRT17P1-005 retained_intron Homo_sapiens 0 569
ENST00000577750 KRT16P1-005 retained_intron Homo_sapiens 0 237
ENST00000577817 KRT17-005 protein_coding Homo_sapiens 0 538
ENST00000580113 KRT16P3-004 processed_transcript Homo_sapiens 0 490
ENST00000580363 KRT17P1-003 processed_transcript Homo_sapiens 0 521
ENST00000580621 KRT16P3-002 retained_intron Homo_sapiens 0 497
ENST00000581013 KRT17P6-002 processed_transcript Homo_sapiens 0 379
ENST00000581146 KRT17P2-004 retained_intron Homo_sapiens 0 507
ENST00000582047 KRT17P1-004 retained_intron Homo_sapiens 0 512
ENST00000582224 KRT17P1-002 retained_intron Homo_sapiens 0 416
ENST00000583748 KRT16P6-003 processed_transcript Homo_sapiens 0 200
ENST00000584481 KRT16P6-004 processed_transcript Homo_sapiens 0 420
ENST00000584759 KRT16P3-003 retained_intron Homo_sapiens 0 244
ENST00000584769 KRT17P2-003 processed_transcript Homo_sapiens 0 760
ENST00000584962 KRT16P1-002 retained_intron Homo_sapiens 0 239
ENST00000588319 KRT16-002 retained_intron Homo_sapiens 1.00053e-42 178
ENST00000590038 KRT17-006 protein_coding Homo_sapiens 0 438
ENST00000593067 KRT16-003 protein_coding Homo_sapiens 0 715
ENST00000593096 KRT19-007 protein_coding Homo_sapiens 0 359

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