C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15A, pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117476 Rps15a-ps6-001 ENSMUSG00000083022 10090 - 11:6172644-6173036 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117476
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117476 0.443±0.21 0.433±0.00 13.589±12.71 2.337±0.04 0.440±0.20 0.935±0.53 0.820±0.51 1.417±0.61 13.326±31.41 0.511±0.14 1.322±0.98 0.675±0.26 0.322±0.14 1.582±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BR CIL_0007BR_0003 CGP 11:5969644-6200415

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322989 RPS15A-001 protein_coding Homo_sapiens 0 442
ENST00000398713 RP11-793K1.1-001 processed_pseudogene Homo_sapiens 0 342
ENST00000403958 RP3-340B19.2-001 processed_pseudogene Homo_sapiens 0 407
ENST00000413110 RPS15AP38-001 processed_pseudogene Homo_sapiens 0 392
ENST00000436276 RPS15AP5-001 processed_pseudogene Homo_sapiens 0 333
ENST00000439856 RPS15AP9-001 processed_pseudogene Homo_sapiens 0 340
ENST00000449183 RPS15AP27-001 processed_pseudogene Homo_sapiens 0 206
ENST00000470598 RPS15AP17-001 processed_pseudogene Homo_sapiens 0 339
ENST00000472521 RPS15AP16-001 processed_pseudogene Homo_sapiens 1e-38 163
ENST00000489168 RPS15AP25-001 processed_pseudogene Homo_sapiens 0 300
ENST00000492525 RPS15AP24-001 processed_pseudogene Homo_sapiens 0 411
ENST00000562935 RPS15A-004 nonsense_mediated_decay Homo_sapiens 0 268
ENST00000563390 RPS15A-002 protein_coding Homo_sapiens 0 442
ENST00000563579 RPS15A-007 protein_coding Homo_sapiens 2e-30 135
ENST00000565420 RPS15A-005 protein_coding Homo_sapiens 0 442
ENST00000569365 RPS15A-011 nonsense_mediated_decay Homo_sapiens 0 374
ENST00000572008 RPS15A-013 nonsense_mediated_decay Homo_sapiens 0 442
ENST00000574723 RPS15A-009 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000575669 RPS15A-003 processed_transcript Homo_sapiens 2e-29 135
ENST00000576008 RPS15A-010 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000576436 RPS15A-012 protein_coding Homo_sapiens 1e-29 135

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