C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15A, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121072 Rps15a-ps3-001 ENSMUSG00000084314 10090 + 4:150847113-150847507 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000121072
Transcript ID Bladder Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000121072 0.138±0.07 0.101±0.07 0.377±0.00 0.113±0.05 0.144±0.05 0.382±0.30 0.370±0.26 0.493±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VW CIL_0007VW_0002 VISTA 4:150524120-151125978

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322989 RPS15A-001 protein_coding Homo_sapiens 0 425
ENST00000398713 RP11-793K1.1-001 processed_pseudogene Homo_sapiens 0 318
ENST00000403958 RP3-340B19.2-001 processed_pseudogene Homo_sapiens 0 379
ENST00000413110 RPS15AP38-001 processed_pseudogene Homo_sapiens 0 359
ENST00000436276 RPS15AP5-001 processed_pseudogene Homo_sapiens 0 327
ENST00000439856 RPS15AP9-001 processed_pseudogene Homo_sapiens 0 313
ENST00000449183 RPS15AP27-001 processed_pseudogene Homo_sapiens 0 206
ENST00000470598 RPS15AP17-001 processed_pseudogene Homo_sapiens 0 333
ENST00000472521 RPS15AP16-001 processed_pseudogene Homo_sapiens 5e-32 141
ENST00000489168 RPS15AP25-001 processed_pseudogene Homo_sapiens 0 311
ENST00000492525 RPS15AP24-001 processed_pseudogene Homo_sapiens 0 394
ENST00000562935 RPS15A-004 nonsense_mediated_decay Homo_sapiens 0 263
ENST00000563390 RPS15A-002 protein_coding Homo_sapiens 0 425
ENST00000563579 RPS15A-007 protein_coding Homo_sapiens 2e-29 132
ENST00000565420 RPS15A-005 protein_coding Homo_sapiens 0 425
ENST00000569365 RPS15A-011 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000572008 RPS15A-013 nonsense_mediated_decay Homo_sapiens 0 425
ENST00000574723 RPS15A-009 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000575669 RPS15A-003 processed_transcript Homo_sapiens 3e-28 132
ENST00000576008 RPS15A-010 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000576436 RPS15A-012 protein_coding Homo_sapiens 2e-28 132

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