C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106588 Rps15a-004 ENSMUSG00000008683 10090 - 7:118109064-118115677 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106588
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106588 47.017±17.44 224.765±89.48 115.572±43.24 68.948±28.57 30.724±8.12 30.774±8.55 46.108±10.26 173.463±204.13 48.242±9.32 117.932±23.53 581.051±72.26 406.321±258.96 56.677±8.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003QM CIL_0003QM_0002 CGP 7:117380979-118116186

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128613 rps15a-001 protein_coding Danio_rerio 0 385
ENST00000322989 RPS15A-001 protein_coding Homo_sapiens 0 464
ENST00000398713 RP11-793K1.1-001 processed_pseudogene Homo_sapiens 0 357
ENST00000403958 RP3-340B19.2-001 processed_pseudogene Homo_sapiens 0 412
ENST00000413110 RPS15AP38-001 processed_pseudogene Homo_sapiens 0 392
ENST00000436276 RPS15AP5-001 processed_pseudogene Homo_sapiens 0 350
ENST00000439856 RPS15AP9-001 processed_pseudogene Homo_sapiens 0 346
ENST00000449183 RPS15AP27-001 processed_pseudogene Homo_sapiens 0 222
ENST00000470598 RPS15AP17-001 processed_pseudogene Homo_sapiens 0 361
ENST00000472521 RPS15AP16-001 processed_pseudogene Homo_sapiens 4.99983e-42 174
ENST00000489168 RPS15AP25-001 processed_pseudogene Homo_sapiens 0 322
ENST00000492525 RPS15AP24-001 processed_pseudogene Homo_sapiens 0 427
ENST00000562935 RPS15A-004 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000563390 RPS15A-002 protein_coding Homo_sapiens 0 464
ENST00000563579 RPS15A-007 protein_coding Homo_sapiens 5e-31 137
ENST00000565420 RPS15A-005 protein_coding Homo_sapiens 0 464
ENST00000569365 RPS15A-011 nonsense_mediated_decay Homo_sapiens 0 396
ENST00000572008 RPS15A-013 nonsense_mediated_decay Homo_sapiens 0 464
ENST00000574723 RPS15A-009 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000575669 RPS15A-003 processed_transcript Homo_sapiens 7e-30 137
ENST00000576008 RPS15A-010 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000576436 RPS15A-012 protein_coding Homo_sapiens 4e-30 137

Loading