C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 26983
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182051 Gm26983-001 ENSMUSG00000098201 10090 - 1:7136199-7136586 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverOvaryTestisENSMUST00000182051
Transcript ID Adipose Breast Colon Heart Kidney Liver Ovary Testis
ENSMUST00000182051 0.489±0.12 0.674±0.44 0.530±0.00 0.141±0.00 0.296±0.00 0.255±0.10 0.462±0.00 0.140±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053O CIL_00053O_0002 CGP 1:6487231-7173628
CIL_00053R CIL_00053R_0002 CGP 1:7088920-9299878

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322989 RPS15A-001 protein_coding Homo_sapiens 0 412
ENST00000398713 RP11-793K1.1-001 processed_pseudogene Homo_sapiens 0 329
ENST00000403958 RP3-340B19.2-001 processed_pseudogene Homo_sapiens 0 390
ENST00000413110 RPS15AP38-001 processed_pseudogene Homo_sapiens 0 357
ENST00000435088 RP11-227H15.7-001 processed_pseudogene Homo_sapiens 0 339
ENST00000436276 RPS15AP5-001 processed_pseudogene Homo_sapiens 0 322
ENST00000439856 RPS15AP9-001 processed_pseudogene Homo_sapiens 0 316
ENST00000449183 RPS15AP27-001 processed_pseudogene Homo_sapiens 0 206
ENST00000470598 RPS15AP17-001 processed_pseudogene Homo_sapiens 0 333
ENST00000472521 RPS15AP16-001 processed_pseudogene Homo_sapiens 0 196
ENST00000489168 RPS15AP25-001 processed_pseudogene Homo_sapiens 0 296
ENST00000492525 RPS15AP24-001 processed_pseudogene Homo_sapiens 0 405
ENST00000562935 RPS15A-004 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000563390 RPS15A-002 protein_coding Homo_sapiens 0 412
ENST00000563579 RPS15A-007 protein_coding Homo_sapiens 1e-27 126
ENST00000565420 RPS15A-005 protein_coding Homo_sapiens 0 412
ENST00000567857 RP11-282M16.1-001 processed_pseudogene Homo_sapiens 0 206
ENST00000569365 RPS15A-011 nonsense_mediated_decay Homo_sapiens 0 340
ENST00000572008 RPS15A-013 nonsense_mediated_decay Homo_sapiens 0 412
ENST00000574723 RPS15A-009 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000575669 RPS15A-003 processed_transcript Homo_sapiens 1e-26 126
ENST00000576008 RPS15A-010 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000576436 RPS15A-012 protein_coding Homo_sapiens 8e-27 126

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