C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-conjugating enzyme E2D 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398734 UBE2D2-004 ENSG00000131508 9606 + 5:139561726-139627686 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398734
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398734 17.986±0.00 26.010±0.00 22.140±0.00 16.452±0.00 9.221±0.00 4.104±2.81 16.429±0.00 4.347±0.00 7.282±4.69 9.736±0.00 10.701±9.18 16.246±8.84 42.067±2.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000548 CIL_000548_0001 CGP 5:139475534-139628433
CIL_000549 CIL_000549_0001 CGP 5:139526431-139683882

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IDA ubiquitin ligase complex
GO:0000209 IDA protein polyubiquitination
GO:0002224 TAS toll-like receptor signaling pathway
GO:0002756 TAS MyD88-independent toll-like receptor signaling pathway
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006464 TAS cellular protein modification process
GO:0006511 TAS ubiquitin-dependent protein catabolic process
GO:0008152 IEA metabolic process
GO:0016567 IDA protein ubiquitination
GO:0016881 IEA acid-amino acid ligase activity
GO:0034138 TAS toll-like receptor 3 signaling pathway
GO:0034142 TAS toll-like receptor 4 signaling pathway
GO:0035666 TAS TRIF-dependent toll-like receptor signaling pathway
GO:0043234 IDA protein complex
GO:0045087 TAS innate immune response
GO:0061418 TAS regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0070062 IDA extracellular vesicular exosome
GO:0070936 IDA protein K48-linked ubiquitination
GO:0071456 TAS cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170693 Ube2d2a-202 protein_coding Mus_musculus 0 1275
ENSMUST00000167406 Ube2d2a-201 protein_coding Mus_musculus 0 1273
ENSMUST00000036976 Gm9762-201 processed_pseudogene Mus_musculus 0 749
ENSMUST00000072578 Ube2d2b-001 protein_coding Mus_musculus 0 737
ENSMUST00000166033 Ube2d3-202 protein_coding Mus_musculus 0 507
ENSMUST00000106291 Ube2d3-201 protein_coding Mus_musculus 0 507
ENSMUST00000117197 Gm4596-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000119320 Gm15361-001 processed_pseudogene Mus_musculus 0 449
ENSDART00000049285 ube2d2l-001 protein_coding Danio_rerio 0 444
ENSMUST00000117500 Gm13331-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000132484 Spopl-001 protein_coding Mus_musculus 0 422
ENSDART00000063837 ube2d2-201 protein_coding Danio_rerio 0 357

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