C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, T type, alpha 1I subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404898 CACNA1I-002 ENSG00000100346 9606 + 22:39570753-39689730 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000404898
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000404898 0.025±0.00 0.811±0.00 2.673±0.00 0.017±0.00 0.035±0.01 0.005±0.00 0.025±0.00 0.024±0.01 0.110±0.08 0.052±0.02 0.007±0.00 0.170±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005W8 CIL_0005W8_0001 CGP 22:39529093-39689737
CIL_0005W5 CIL_0005W5_0001 CGP 22:39570753-39893864

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005245 IBA voltage-gated calcium channel activity
GO:0005515 IPI protein binding
GO:0005886 IBA plasma membrane
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0007165 TAS signal transduction
GO:0007411 TAS axon guidance
GO:0016020 IEA membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0055085 IEA transmembrane transport
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162155 Cacna1i-002 nonsense_mediated_decay Mus_musculus 0 6357
ENSMUST00000160424 Cacna1i-001 protein_coding Mus_musculus 0 6357
ENSMUST00000078496 Cacna1h-201 protein_coding Mus_musculus 0 1456
ENSMUST00000159048 Cacna1h-002 protein_coding Mus_musculus 0 1456
ENSMUST00000159610 Cacna1h-001 protein_coding Mus_musculus 0 1456
ENSDART00000145615 cacna1i-001 protein_coding Danio_rerio 0 1306
ENSMUST00000107788 Cacna1g-009 protein_coding Mus_musculus 0 1206
ENSMUST00000107792 Cacna1g-004 protein_coding Mus_musculus 0 1206
ENSMUST00000107785 Cacna1g-006 protein_coding Mus_musculus 0 1144
ENSMUST00000107793 Cacna1g-008 protein_coding Mus_musculus 0 1144
ENSMUST00000107791 Cacna1g-002 protein_coding Mus_musculus 0 1144
ENSDART00000151012 si:ch73-379f7.5-001 protein_coding Danio_rerio 0 1055
ENSDART00000085216 cacna1i-201 protein_coding Danio_rerio 0 893
ENSMUST00000021234 Cacna1g-201 protein_coding Mus_musculus 0 695
ENSMUST00000107789 Cacna1g-011 protein_coding Mus_musculus 0 695
ENSMUST00000107790 Cacna1g-010 protein_coding Mus_musculus 0 695
ENSMUST00000100561 Cacna1g-005 protein_coding Mus_musculus 0 695
ENSMUST00000103166 Cacna1g-003 protein_coding Mus_musculus 0 695
ENSMUST00000107786 Cacna1g-001 protein_coding Mus_musculus 0 695
ENSMUST00000152811 Cacna1g-007 processed_transcript Mus_musculus 0 625
ENSDART00000103611 cacna1hb-201 protein_coding Danio_rerio 0 477
ENSDART00000141604 cacna1hb-001 protein_coding Danio_rerio 0 473
ENSDART00000153256 cacna1g-001 protein_coding Danio_rerio 0 459
ENSDART00000123534 cacna1g-201 protein_coding Danio_rerio 0 435
ENSMUST00000160175 Cacna1i-003 protein_coding Mus_musculus 0 399
ENSMUST00000161454 Cacna1h-004 retained_intron Mus_musculus 0 387
ENSMUST00000162025 Cacna1i-005 protein_coding Mus_musculus 0 307
ENSMUST00000161863 Cacna1i-004 protein_coding Mus_musculus 2e-38 167
ENSMUST00000162913 Cacna1i-006 nonsense_mediated_decay Mus_musculus 8e-38 165

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