C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: metastasis associated 1 family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405094 MTA3-017 ENSG00000057935 9606 + 2:42568746-42753399 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000405094
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000405094 1.743±0.00 7.613±0.00 1.821±0.20 2.688±0.84 1.405±0.61 0.759±0.00 2.188±0.00 0.730±0.00 7.235±1.66 4.169±0.68 9.076±2.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TA CIL_0003TA_0002 CGP 2:42442017-42756947
CIL_0003T7 CIL_0003T7_0002 CGP 2:42494569-42764261

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112352 Mta3-004 protein_coding Mus_musculus 0 1947
ENSMUST00000067826 Mta3-001 protein_coding Mus_musculus 0 1927
ENSMUST00000177069 Mta3-003 nonsense_mediated_decay Mus_musculus 0 1829
ENSMUST00000112349 Mta3-005 protein_coding Mus_musculus 0 1650
ENSMUST00000112350 Mta3-002 protein_coding Mus_musculus 0 1631
ENSMUST00000176054 Mta3-008 protein_coding Mus_musculus 0 907
ENSMUST00000176816 Mta3-007 protein_coding Mus_musculus 0 676
ENSDART00000122665 mta3-004 protein_coding Danio_rerio 0 453
ENSDART00000127454 mta3-001 protein_coding Danio_rerio 0 453
ENSDART00000077180 mta3-002 protein_coding Danio_rerio 0 453
ENSDART00000045583 MTA1-002 protein_coding Danio_rerio 0 409
ENSMUST00000175920 Mta3-009 processed_transcript Mus_musculus 0 316
ENSDART00000156281 MTA1-003 retained_intron Danio_rerio 2e-27 128
ENSDART00000157183 MTA1-001 retained_intron Danio_rerio 7e-22 110

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