C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003TA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061622-ENSDARG00000054903 CGP 7955 12:26737021-26812162
GeneTranscriptPositionBiotype
ENSDARG00000054903 (mta3)
metastasis associated 1 family, member 3 		ENSDART00000077180 (mta3-002) 26751495-26794781 protein_coding
ENSDART00000122665 (mta3-004) 26751525-26812162 protein_coding
ENSDART00000127454 (mta3-001) 26751525-26794783 protein_coding
ENSDART00000139362 (mta3-003) 26751451-26779439 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0003TA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171126-ENSG00000057935 CGP 9606 2:42442017-42756947
GeneTranscriptPositionBiotype
ENSG00000057935 (MTA3)
metastasis associated 1 family, member 3 		ENST00000405094 (MTA3-017) 42568746-42753399 protein_coding
ENST00000405592 (MTA3-005) 42494569-42756947 protein_coding
ENST00000406652 (MTA3-001) 42568045-42756947 protein_coding
ENST00000406911 (MTA3-003) 42568675-42709544 protein_coding
ENST00000407270 (MTA3-002) 42568517-42709544 protein_coding
ENST00000409019 (MTA3-018) 42568738-42754060 nonsense_mediated_decay
ENST00000430763 (MTA3-010) 42568741-42659789 nonsense_mediated_decay
ENST00000433553 (MTA3-011) 42569384-42609488 protein_coding
ENST00000454356 (MTA3-004) 42568675-42709213 nonsense_mediated_decay
ENST00000461256 (MTA3-009) 42568168-42659776 processed_transcript
ENST00000467925 (MTA3-006) 42703649-42753848 retained_intron
ENST00000472767 (MTA3-014) 42695765-42709153 processed_transcript
ENST00000475383 (MTA3-015) 42695765-42709211 processed_transcript
ENST00000478602 (MTA3-016) 42709075-42723334 retained_intron
ENST00000482875 (MTA3-007) 42702307-42709213 retained_intron
ENST00000484780 (MTA3-008) 42568111-42656302 processed_transcript
ENST00000490611 (MTA3-013) 42659520-42682706 retained_intron
ENST00000491314 (MTA3-019) 42613675-42644245 processed_transcript
ENST00000493983 (MTA3-012) 42570437-42656205 processed_transcript
ENSG00000171126 (KCNG3)
potassium voltage-gated channel, subfamily G, member 3 		ENST00000306078 (KCNG3-001) 42442017-42494097 protein_coding
ENST00000394973 (KCNG3-002) 42442032-42493977 protein_coding
ENSG00000200550 (RNU6-137P)
RNA, U6 small nuclear 137, pseudogene 		ENST00000363680 (RNU6-137P-201) 42712740-42712847 snRNA
ENSG00000215263 (AC025750.7)
 ENST00000399891 (AC025750.7-001) 42532766-42533442 processed_pseudogene
ENSG00000226523 (AC074375.1)
 ENST00000372993 (AC074375.1-001) 42680088-42680279 processed_pseudogene
ENSG00000232526 (VDAC1P13)
voltage-dependent anion channel 1 pseudogene 13 		ENST00000447826 (VDAC1P13-001) 42463139-42463997 processed_pseudogene
ENSG00000236913 (AC025750.5)
 ENST00000442609 (AC025750.5-001) 42469817-42470266 processed_pseudogene
ENSG00000273913 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000611671 (Metazoa_SRP.1-251) 42511570-42511851 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003TA_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045053-ENSMUSG00000055817 CGP 10090 17:83585957-83821516
GeneTranscriptPositionBiotype
ENSMUSG00000045053 (Kcng3)
potassium voltage-gated channel, subfamily G, member 3 		ENSMUST00000051482 (Kcng3-201) 83585957-83631895 protein_coding
ENSMUSG00000055817 (Mta3)
metastasis associated 3 		ENSMUST00000067826 (Mta3-001) 83706191-83814905 protein_coding
ENSMUST00000112349 (Mta3-005) 83706163-83792875 protein_coding
ENSMUST00000112350 (Mta3-002) 83706163-83792873 protein_coding
ENSMUST00000112352 (Mta3-004) 83706163-83805423 protein_coding
ENSMUST00000175920 (Mta3-009) 83795422-83804597 processed_transcript
ENSMUST00000176054 (Mta3-008) 83784334-83820216 protein_coding
ENSMUST00000176816 (Mta3-007) 83755634-83800240 protein_coding
ENSMUST00000177069 (Mta3-003) 83706184-83821516 nonsense_mediated_decay
ENSMUST00000177416 (Mta3-006) 83729164-83753868 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TA_0001ENSDARG00000054903ENSDART00000077180ENSDART00000122665ENSDART00000127454ENSDART00000139362CIL_0003TA_0002ENSG00000057935ENST00000405094ENST00000405592ENST00000406652ENST00000406911ENST00000407270ENST00000409019ENST00000430763ENST00000433553ENST00000454356ENST00000461256ENST00000467925ENST00000472767ENST00000475383ENST00000478602ENST00000482875ENST00000484780ENST00000490611ENST00000491314ENST00000493983ENSG00000171126ENST00000306078ENST00000394973ENSG00000200550ENST00000363680ENSG00000215263ENST00000399891ENSG00000226523ENST00000372993ENSG00000232526ENST00000447826ENSG00000236913ENST00000442609ENSG00000273913ENST00000611671CIL_0003TA_0003ENSMUSG00000045053ENSMUST00000051482ENSMUSG00000055817ENSMUST00000067826ENSMUST00000112349ENSMUST00000112350ENSMUST00000112352ENSMUST00000175920ENSMUST00000176054ENSMUST00000176816ENSMUST00000177069ENSMUST00000177416
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TA_0001ENSDARG00000054903ENSDART00000077180ENSDART00000122665ENSDART00000127454ENSDART00000139362CIL_0003TA_0002ENSG00000057935ENST00000405094ENST00000405592ENST00000406652ENST00000406911ENST00000407270ENST00000409019ENST00000454356ENST00000467925ENST00000472767ENST00000475383ENST00000478602ENST00000482875ENST00000493983ENSG00000171126ENST00000306078ENST00000394973ENSG00000200550ENST00000363680ENSG00000215263ENST00000399891ENSG00000226523ENST00000372993ENSG00000232526ENST00000447826ENSG00000236913ENST00000442609ENSG00000273913ENST00000611671CIL_0003TA_0003ENSMUSG00000045053ENSMUST00000051482ENSMUSG00000055817ENSMUST00000067826ENSMUST00000112349ENSMUST00000112350ENSMUST00000112352ENSMUST00000175920ENSMUST00000176816ENSMUST00000177069
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000054903 ENSDART00000077180 N/A N/A N/A N/A N/A N/A 11.434±9.86 N/A 1.146±0.00 N/A 2.114±0.00 N/A N/A N/A
ENSDART00000122665 N/A N/A N/A N/A N/A N/A N/A 0.347±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000127454 N/A N/A N/A 3.381±0.00 N/A N/A 5.776±1.61 3.165±3.12 N/A N/A 1.572±0.00 N/A N/A N/A
ENSDART00000139362 N/A N/A N/A N/A N/A N/A N/A 9.647±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000057935 ENST00000405094 1.743±0.00 N/A N/A 7.613±0.00 1.821±0.20 2.688±0.84 1.405±0.61 0.759±0.00 2.188±0.00 N/A 0.730±0.00 7.235±1.66 4.169±0.68 9.076±2.64
ENST00000405592 N/A 0.503±0.00 N/A 3.279±0.69 N/A N/A N/A N/A N/A 0.867±0.00 N/A 0.925±0.00 N/A 1.831±0.00
ENST00000406652 N/A 1.452±0.00 0.319±0.00 7.199±0.00 N/A 1.927±1.40 N/A N/A 0.557±0.28 1.523±0.00 N/A 6.303±0.80 0.712±0.00 2.489±0.00
ENST00000406911 N/A N/A N/A N/A 1.391±0.01 1.994±0.00 N/A N/A N/A 1.270±0.00 N/A N/A 2.729±0.07 N/A
ENST00000407270 N/A N/A 0.503±0.00 N/A N/A 2.067±0.00 N/A 1.456±0.00 0.529±0.00 N/A 0.760±0.00 5.142±1.39 N/A 4.120±0.00
ENST00000409019 N/A N/A N/A N/A 0.826±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454356 3.294±0.00 1.710±0.00 N/A N/A 2.272±0.00 2.158±0.00 2.796±0.00 3.408±1.68 1.491±0.00 2.584±0.00 N/A 27.204±22.65 10.031±9.91 26.326±15.42
ENST00000461256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467925 N/A N/A N/A N/A N/A N/A N/A 0.893±0.00 N/A N/A 1.622±0.00 N/A N/A N/A
ENST00000472767 N/A N/A N/A N/A N/A N/A N/A N/A 1.961±0.00 N/A N/A N/A N/A N/A
ENST00000475383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.918±0.00 N/A N/A N/A
ENST00000478602 N/A N/A N/A N/A N/A N/A 2.161±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000482875 N/A N/A N/A N/A 1.496±0.00 N/A N/A N/A N/A N/A N/A 2.127±0.00 N/A N/A
ENST00000484780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493983 N/A N/A N/A N/A N/A N/A 3.966±0.00 N/A 8.173±0.00 N/A N/A 44.099±0.00 31.486±0.00 44.488±0.00
ENSG00000171126 ENST00000306078 N/A N/A N/A 0.567±0.24 N/A N/A N/A N/A N/A 0.036±0.00 N/A 0.606±0.00 N/A 0.756±0.00
ENST00000394973 N/A 0.013±0.00 0.121±0.00 N/A 0.089±0.08 0.429±0.29 N/A 0.041±0.00 N/A 0.176±0.00 N/A 1.015±1.07 N/A 0.533±0.00
ENSG00000200550 ENST00000363680 1.445±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.493±0.00 N/A N/A
ENSG00000215263 ENST00000399891 N/A N/A N/A N/A 0.081±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226523 ENST00000372993 N/A N/A N/A N/A 1.307±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232526 ENST00000447826 N/A N/A 0.121±0.00 0.041±0.00 0.391±0.00 0.119±0.06 N/A N/A N/A N/A N/A 0.340±0.23 N/A 0.174±0.11
ENSG00000236913 ENST00000442609 N/A 0.086±0.00 1.430±0.00 N/A 0.139±0.11 0.105±0.00 N/A N/A N/A 0.025±0.00 0.146±0.00 0.074±0.00 N/A 0.057±0.00
ENSG00000273913 ENST00000611671 0.150±0.00 0.528±0.00 0.705±0.00 0.634±0.00 0.080±0.00 0.147±0.00 0.152±0.00 0.167±0.00 N/A N/A N/A 1.072±0.73 0.282±0.06 0.499±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000045053 ENSMUST00000051482 0.215±0.20 1.134±0.70 N/A 0.248±0.19 0.363±0.27 0.199±0.09 0.026±0.00 0.065±0.02 0.054±0.03 0.033±0.02 N/A 1.095±0.59 0.123±0.10 0.345±0.12
ENSMUSG00000055817 ENSMUST00000067826 4.907±1.35 6.097±0.86 14.351±1.59 3.356±0.07 5.940±2.31 6.529±2.05 1.355±0.00 5.425±1.21 4.285±2.59 5.406±0.98 0.464±0.12 8.143±2.21 14.660±8.58 3.476±1.16
ENSMUST00000112349 8.096±0.98 7.508±2.44 14.110±0.39 4.519±0.38 5.221±1.76 6.575±1.88 2.270±0.76 4.033±1.12 5.572±3.62 5.127±0.71 0.872±0.21 9.305±2.75 35.576±18.30 2.437±0.51
ENSMUST00000112350 6.314±0.49 N/A 10.470±1.75 N/A 5.891±0.98 5.918±0.69 3.277±0.61 4.101±1.19 8.250±5.42 3.521±0.93 1.226±0.07 7.369±3.74 38.023±14.76 5.221±1.30
ENSMUST00000112352 2.514±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.851±0.27 0.402±0.06 2.927±0.50 N/A N/A
ENSMUST00000175920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.721±6.53
ENSMUST00000176054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176816 N/A 16.957±2.57 N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.197±9.24 183.275±13.77 6.709±0.00
ENSMUST00000177069 3.236±0.80 3.854±0.00 3.632±0.00 4.742±2.89 N/A N/A 0.697±0.10 N/A N/A 2.270±0.00 N/A 2.685±0.43 7.231±0.00 1.727±0.26
ENSMUST00000177416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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