C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: metastasis associated 1 family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409019 MTA3-018 ENSG00000057935 9606 + 2:42568738-42754060 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENST00000409019
Transcript ID Breast
ENST00000409019 0.826±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TA CIL_0003TA_0002 CGP 2:42442017-42756947
CIL_0003T7 CIL_0003T7_0002 CGP 2:42494569-42764261

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112352 Mta3-004 protein_coding Mus_musculus 0 1975
ENSMUST00000067826 Mta3-001 protein_coding Mus_musculus 0 1956
ENSMUST00000177069 Mta3-003 nonsense_mediated_decay Mus_musculus 0 1842
ENSMUST00000112350 Mta3-002 protein_coding Mus_musculus 0 1659
ENSMUST00000112349 Mta3-005 protein_coding Mus_musculus 0 1646
ENSMUST00000176054 Mta3-008 protein_coding Mus_musculus 0 878
ENSMUST00000176816 Mta3-007 protein_coding Mus_musculus 0 691
ENSDART00000122665 mta3-004 protein_coding Danio_rerio 0 453
ENSDART00000127454 mta3-001 protein_coding Danio_rerio 0 453
ENSDART00000077180 mta3-002 protein_coding Danio_rerio 0 453
ENSDART00000045583 MTA1-002 protein_coding Danio_rerio 0 401
ENSMUST00000175920 Mta3-009 processed_transcript Mus_musculus 0 316
ENSDART00000156281 MTA1-003 retained_intron Danio_rerio 7e-28 130
ENSDART00000157183 MTA1-001 retained_intron Danio_rerio 3e-22 111

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