C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424115 HNRNPA1P21-001 ENSG00000228168 9606 + 3:39334979-39335939 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000424115
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000424115 0.782±0.00 1.277±0.00 0.240±0.00 0.236±0.00 0.285±0.15 0.534±0.00 0.184±0.00 0.292±0.00 0.096±0.02 0.629±0.00 0.166±0.00 0.293±0.28 0.122±0.00 0.195±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000140 CIL_000140_0001 CGP 3:39329706-39397351

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1186
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1184
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1171
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 1120
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 1110
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1096
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 907
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 907
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 883
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 749
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 448

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