C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin, alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424234 ACTN4-201 ENSG00000130402 9606 + 19:38647746-38729432 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungMuscleOvaryTestisENST00000424234
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000424234 13.513±0.00 6.477±0.00 26.747±0.00 35.086±0.00 8.403±0.00 18.466±0.00 16.709±0.00 9.405±0.00 21.472±0.00 42.621±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000144909 Actn4-002 processed_transcript Mus_musculus 0 1797
ENSMUST00000068045 Actn4-001 protein_coding Mus_musculus 0 1797
ENSMUST00000021554 Actn1-201 protein_coding Mus_musculus 0 913
ENSMUST00000167327 Actn1-202 protein_coding Mus_musculus 0 798
ENSDART00000100217 actn1-201 protein_coding Danio_rerio 0 695
ENSDART00000133740 actn1-002 nonsense_mediated_decay Danio_rerio 0 695
ENSDART00000140243 actn1-001 protein_coding Danio_rerio 0 695
ENSDART00000123678 actn1-202 protein_coding Danio_rerio 0 586
ENSDART00000001649 actn3b-001 protein_coding Danio_rerio 0 531
ENSMUST00000143584 Actn4-007 retained_intron Mus_musculus 0 462
ENSMUST00000129338 Actn4-008 retained_intron Mus_musculus 0 388
ENSMUST00000127210 Actn4-005 protein_coding Mus_musculus 0 339

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