C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068045 Actn4-001 ENSMUSG00000054808 10090 - 7:28893248-28962340 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068045
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068045 74.476±23.57 44.699±4.10 76.328±0.15 45.608±16.76 154.074±11.89 19.410±2.60 87.534±5.89 35.491±5.22 80.154±1.61 6.594±1.41 61.389±27.79 79.198±31.77 4.708±0.44

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0001725 IDA stress fiber
GO:0001882 IEA nucleoside binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005911 IDA cell-cell junction
GO:0005925 IEA focal adhesion
GO:0015031 IEA protein transport
GO:0030018 IDA Z disc
GO:0030529 ISS ribonucleoprotein complex
GO:0030863 IDA cortical cytoskeleton
GO:0031143 IDA pseudopodium
GO:0032403 IEA protein complex binding
GO:0042803 TAS protein homodimerization activity
GO:0042981 IEA regulation of apoptotic process
GO:0043005 IEA neuron projection
GO:0043234 IEA protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0047485 IEA protein N-terminus binding
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048549 IMP positive regulation of pinocytosis
GO:0051015 IDA actin filament binding
GO:0051017 IDA actin filament bundle assembly
GO:0051271 IDA negative regulation of cellular component movement
GO:0051272 IDA positive regulation of cellular component movement
GO:0070062 IEA extracellular vesicular exosome
GO:0070830 IEA:IMP tight junction assembly
GO:1902396 IEA:IMP protein localization to tight junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000100217 actn1-201 protein_coding Danio_rerio 0 1581
ENSDART00000133740 actn1-002 nonsense_mediated_decay Danio_rerio 0 1581
ENSDART00000140243 actn1-001 protein_coding Danio_rerio 0 1581
ENSDART00000123678 actn1-202 protein_coding Danio_rerio 0 1500
ENSDART00000005682 actn3a-001 protein_coding Danio_rerio 0 1317
ENSDART00000001649 actn3b-001 protein_coding Danio_rerio 0 1310
ENSDART00000032887 ACTN4 (1 of 3)-201 protein_coding Danio_rerio 0 760
ENSDART00000130717 ACTN4 (3 of 3)-201 protein_coding Danio_rerio 0 507
ENST00000193403 ACTN1-001 protein_coding Homo_sapiens 0 2272
ENST00000252699 ACTN4-001 protein_coding Homo_sapiens 0 3794
ENST00000376839 ACTN1-007 protein_coding Homo_sapiens 0 2089
ENST00000390009 ACTN4-010 protein_coding Homo_sapiens 0 2604
ENST00000394419 ACTN1-005 protein_coding Homo_sapiens 0 2117
ENST00000424234 ACTN4-201 protein_coding Homo_sapiens 0 1797
ENST00000438964 ACTN1-002 protein_coding Homo_sapiens 0 2169
ENST00000440400 ACTN4-004 protein_coding Homo_sapiens 0 1317
ENST00000477174 ACTN4-006 processed_transcript Homo_sapiens 0 370
ENST00000495553 ACTN4-002 processed_transcript Homo_sapiens 0 643
ENST00000497637 ACTN4-005 processed_transcript Homo_sapiens 0 542
ENST00000502692 ACTN3-003 protein_coding Homo_sapiens 0 1319
ENST00000511191 ACTN3-005 nonsense_mediated_decay Homo_sapiens 3e-21 106
ENST00000513398 ACTN3-001 protein_coding Homo_sapiens 0 1419
ENST00000514175 ACTN4P1-001 processed_pseudogene Homo_sapiens 0 1672
ENST00000538545 ACTN1-006 protein_coding Homo_sapiens 0 2087
ENST00000544964 ACTN1-019 protein_coding Homo_sapiens 0 442
ENST00000553290 ACTN1-020 protein_coding Homo_sapiens 0 431
ENST00000555075 ACTN1-022 protein_coding Homo_sapiens 0 412
ENST00000556083 ACTN1-008 retained_intron Homo_sapiens 0 1051
ENST00000556343 ACTN1-021 processed_transcript Homo_sapiens 7e-39 163
ENST00000556432 ACTN1-023 retained_intron Homo_sapiens 0 370
ENST00000586538 ACTN4-012 protein_coding Homo_sapiens 0 641
ENST00000588618 ACTN4-007 retained_intron Homo_sapiens 0 1989
ENST00000589528 ACTN4-013 protein_coding Homo_sapiens 0 363
ENST00000593700 CAPN12-004 retained_intron Homo_sapiens 9e-24 115
ENST00000594552 CAPN12-005 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000597987 CAPN12-011 protein_coding Homo_sapiens 0 193
ENST00000601953 CAPN12-002 protein_coding Homo_sapiens 7e-33 147

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