C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167327 Actn1-202 ENSMUSG00000015143 10090 - 12:80168322-80260091 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167327
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167327 34.405±21.33 1.995±0.08 178.023±34.49 15.834±19.19 10.154±1.68 39.221±6.16 8.129±1.07 6.953±0.68 2.926±1.23 19.952±4.37 1.164±0.37 50.908±13.56 35.183±25.84 2.474±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CK CIL_0002CK_0002 CGP 12:80107760-80260371
CIL_0001JZ CIL_0001JZ_0003 CGP 12:80167542-80436601

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 ISO double-stranded RNA binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005916 IDA fascia adherens
GO:0030018 IDA Z disc
GO:0051015 IDA actin filament binding
GO:0051017 IEA actin filament bundle assembly
GO:0051764 IEA actin crosslink formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000123678 actn1-202 protein_coding Danio_rerio 0 2047
ENSDART00000100217 actn1-201 protein_coding Danio_rerio 0 1938
ENSDART00000133740 actn1-002 nonsense_mediated_decay Danio_rerio 0 1938
ENSDART00000140243 actn1-001 protein_coding Danio_rerio 0 1938
ENSDART00000001649 actn3b-001 protein_coding Danio_rerio 0 1563
ENSDART00000005682 actn3a-001 protein_coding Danio_rerio 0 1386
ENST00000193403 ACTN1-001 protein_coding Homo_sapiens 0 3482
ENST00000252699 ACTN4-001 protein_coding Homo_sapiens 0 2085
ENST00000376839 ACTN1-007 protein_coding Homo_sapiens 0 3502
ENST00000390009 ACTN4-010 protein_coding Homo_sapiens 0 1447
ENST00000394419 ACTN1-005 protein_coding Homo_sapiens 0 3192
ENST00000424234 ACTN4-201 protein_coding Homo_sapiens 0 798
ENST00000438964 ACTN1-002 protein_coding Homo_sapiens 0 3657
ENST00000440400 ACTN4-004 protein_coding Homo_sapiens 0 697
ENST00000473049 ACTN4P2-001 processed_pseudogene Homo_sapiens 2e-37 161
ENST00000495553 ACTN4-002 processed_transcript Homo_sapiens 0 453
ENST00000502692 ACTN3-003 protein_coding Homo_sapiens 0 1476
ENST00000511191 ACTN3-005 nonsense_mediated_decay Homo_sapiens 0 351
ENST00000513398 ACTN3-001 protein_coding Homo_sapiens 0 1546
ENST00000514175 ACTN4P1-001 processed_pseudogene Homo_sapiens 0 682
ENST00000538545 ACTN1-006 protein_coding Homo_sapiens 0 3485
ENST00000544964 ACTN1-019 protein_coding Homo_sapiens 0 785
ENST00000553290 ACTN1-020 protein_coding Homo_sapiens 0 640
ENST00000553370 ACTN1-015 protein_coding Homo_sapiens 0 750
ENST00000553659 ACTN1-013 protein_coding Homo_sapiens 1e-38 163
ENST00000553779 ACTN1-016 protein_coding Homo_sapiens 0 529
ENST00000553882 ACTN1-009 retained_intron Homo_sapiens 0 368
ENST00000554158 ACTN1-017 processed_transcript Homo_sapiens 0 673
ENST00000554508 ACTN1-018 processed_transcript Homo_sapiens 0 614
ENST00000555075 ACTN1-022 protein_coding Homo_sapiens 0 608
ENST00000555616 ACTN1-012 protein_coding Homo_sapiens 0 1142
ENST00000556083 ACTN1-008 retained_intron Homo_sapiens 0 1709
ENST00000556343 ACTN1-021 processed_transcript Homo_sapiens 4.00001e-41 171
ENST00000556432 ACTN1-023 retained_intron Homo_sapiens 0 475
ENST00000556433 ACTN1-011 protein_coding Homo_sapiens 0 1046
ENST00000556571 ACTN1-014 protein_coding Homo_sapiens 0 531
ENST00000586538 ACTN4-012 protein_coding Homo_sapiens 0 510
ENST00000588618 ACTN4-007 retained_intron Homo_sapiens 0 1291

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