C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144909 Actn4-002 ENSMUSG00000054808 10090 - 7:28893653-28907385 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000144909
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000144909 56.973±6.39 29.315±6.28 44.521±1.67 19.238±5.23 42.039±11.00 129.177±22.20 16.655±0.33 45.969±12.11 22.607±6.74 38.078±0.95 3.708±0.99 42.666±16.59 70.122±42.71 12.776±3.81

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000100217 actn1-201 protein_coding Danio_rerio 0 1098
ENSDART00000133740 actn1-002 nonsense_mediated_decay Danio_rerio 0 1098
ENSDART00000140243 actn1-001 protein_coding Danio_rerio 0 1098
ENSDART00000123678 actn1-202 protein_coding Danio_rerio 0 1016
ENSDART00000001649 actn3b-001 protein_coding Danio_rerio 0 811
ENSDART00000005682 actn3a-001 protein_coding Danio_rerio 0 785
ENSDART00000032887 ACTN4 (1 of 3)-201 protein_coding Danio_rerio 0 710
ENST00000193403 ACTN1-001 protein_coding Homo_sapiens 0 1594
ENST00000252699 ACTN4-001 protein_coding Homo_sapiens 0 2621
ENST00000376839 ACTN1-007 protein_coding Homo_sapiens 0 1491
ENST00000390009 ACTN4-010 protein_coding Homo_sapiens 0 2597
ENST00000394419 ACTN1-005 protein_coding Homo_sapiens 0 1439
ENST00000424234 ACTN4-201 protein_coding Homo_sapiens 0 1797
ENST00000438964 ACTN1-002 protein_coding Homo_sapiens 0 1491
ENST00000440400 ACTN4-004 protein_coding Homo_sapiens 0 1317
ENST00000477174 ACTN4-006 processed_transcript Homo_sapiens 0 370
ENST00000497637 ACTN4-005 processed_transcript Homo_sapiens 0 542
ENST00000502692 ACTN3-003 protein_coding Homo_sapiens 0 789
ENST00000513398 ACTN3-001 protein_coding Homo_sapiens 0 789
ENST00000514175 ACTN4P1-001 processed_pseudogene Homo_sapiens 0 1672
ENST00000538545 ACTN1-006 protein_coding Homo_sapiens 0 1410
ENST00000544964 ACTN1-019 protein_coding Homo_sapiens 0 442
ENST00000553290 ACTN1-020 protein_coding Homo_sapiens 0 431
ENST00000555075 ACTN1-022 protein_coding Homo_sapiens 0 412
ENST00000556083 ACTN1-008 retained_intron Homo_sapiens 0 1051
ENST00000556343 ACTN1-021 processed_transcript Homo_sapiens 7e-39 163
ENST00000556432 ACTN1-023 retained_intron Homo_sapiens 0 370
ENST00000586538 ACTN4-012 protein_coding Homo_sapiens 0 425
ENST00000588618 ACTN4-007 retained_intron Homo_sapiens 0 797

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