C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021554 Actn1-201 ENSMUSG00000015143 10090 - 12:80167542-80260371 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021554
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021554 16.160±5.87 3.455±0.56 57.901±6.93 6.016±0.59 11.465±3.33 24.309±3.66 2.325±0.39 5.757±0.85 5.969±3.20 12.850±3.35 0.817±0.40 33.926±6.81 39.849±22.69 1.063±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CK CIL_0002CK_0002 CGP 12:80107760-80260371
CIL_0001JZ CIL_0001JZ_0003 CGP 12:80167542-80436601

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 TAS stress fiber
GO:0003725 ISO double-stranded RNA binding
GO:0005178 IEA integrin binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005916 IDA fascia adherens
GO:0005925 TAS focal adhesion
GO:0017166 IEA vinculin binding
GO:0019904 IEA protein domain specific binding
GO:0030018 IDA Z disc
GO:0030141 NAS secretory granule
GO:0030863 TAS cortical cytoskeleton
GO:0030864 IEA cortical actin cytoskeleton
GO:0030865 TAS cortical cytoskeleton organization
GO:0032127 TAS dense core granule membrane
GO:0042803 TAS protein homodimerization activity
GO:0042995 IEA cell projection
GO:0043197 IEA dendritic spine
GO:0044325 IEA ion channel binding
GO:0048041 IEA focal adhesion assembly
GO:0051015 IDA actin filament binding
GO:0051017 IDA actin filament bundle assembly
GO:0051271 IEA negative regulation of cellular component movement
GO:0051764 IEA actin crosslink formation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000100217 actn1-201 protein_coding Danio_rerio 0 2049
ENSDART00000133740 actn1-002 nonsense_mediated_decay Danio_rerio 0 2049
ENSDART00000140243 actn1-001 protein_coding Danio_rerio 0 2049
ENSDART00000123678 actn1-202 protein_coding Danio_rerio 0 1953
ENSDART00000001649 actn3b-001 protein_coding Danio_rerio 0 1434
ENSDART00000005682 actn3a-001 protein_coding Danio_rerio 0 1304
ENST00000193403 ACTN1-001 protein_coding Homo_sapiens 0 3875
ENST00000252699 ACTN4-001 protein_coding Homo_sapiens 0 2200
ENST00000376839 ACTN1-007 protein_coding Homo_sapiens 0 3338
ENST00000390009 ACTN4-010 protein_coding Homo_sapiens 0 1561
ENST00000394419 ACTN1-005 protein_coding Homo_sapiens 0 3446
ENST00000424234 ACTN4-201 protein_coding Homo_sapiens 0 913
ENST00000438964 ACTN1-002 protein_coding Homo_sapiens 0 3615
ENST00000440400 ACTN4-004 protein_coding Homo_sapiens 0 588
ENST00000473049 ACTN4P2-001 processed_pseudogene Homo_sapiens 2e-38 165
ENST00000495553 ACTN4-002 processed_transcript Homo_sapiens 0 453
ENST00000502692 ACTN3-003 protein_coding Homo_sapiens 0 1380
ENST00000511191 ACTN3-005 nonsense_mediated_decay Homo_sapiens 0 351
ENST00000513398 ACTN3-001 protein_coding Homo_sapiens 0 1450
ENST00000514175 ACTN4P1-001 processed_pseudogene Homo_sapiens 0 784
ENST00000538545 ACTN1-006 protein_coding Homo_sapiens 0 3347
ENST00000544964 ACTN1-019 protein_coding Homo_sapiens 0 785
ENST00000553290 ACTN1-020 protein_coding Homo_sapiens 0 667
ENST00000553370 ACTN1-015 protein_coding Homo_sapiens 0 750
ENST00000553659 ACTN1-013 protein_coding Homo_sapiens 1e-38 163
ENST00000553779 ACTN1-016 protein_coding Homo_sapiens 0 529
ENST00000553882 ACTN1-009 retained_intron Homo_sapiens 0 418
ENST00000554158 ACTN1-017 processed_transcript Homo_sapiens 0 673
ENST00000554508 ACTN1-018 processed_transcript Homo_sapiens 0 614
ENST00000555075 ACTN1-022 protein_coding Homo_sapiens 0 610
ENST00000555616 ACTN1-012 protein_coding Homo_sapiens 0 1142
ENST00000556083 ACTN1-008 retained_intron Homo_sapiens 0 1960
ENST00000556343 ACTN1-021 processed_transcript Homo_sapiens 4.00001e-41 171
ENST00000556432 ACTN1-023 retained_intron Homo_sapiens 0 477
ENST00000556433 ACTN1-011 protein_coding Homo_sapiens 0 1046
ENST00000556571 ACTN1-014 protein_coding Homo_sapiens 0 531
ENST00000586538 ACTN4-012 protein_coding Homo_sapiens 0 510
ENST00000588618 ACTN4-007 retained_intron Homo_sapiens 0 1291

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