C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127210 Actn4-005 ENSMUSG00000054808 10090 - 7:28898620-28962223 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSMUST00000127210
Transcript ID Brain
ENSMUST00000127210 22.577±16.28

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0030018 IDA Z disc
GO:0030863 IDA cortical cytoskeleton
GO:0051015 IDA actin filament binding
GO:0070830 IEA tight junction assembly
GO:1902396 IEA protein localization to tight junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000005682 actn3a-001 protein_coding Danio_rerio 0 990
ENSDART00000100217 actn1-201 protein_coding Danio_rerio 0 966
ENSDART00000123678 actn1-202 protein_coding Danio_rerio 0 966
ENSDART00000133740 actn1-002 nonsense_mediated_decay Danio_rerio 0 966
ENSDART00000140243 actn1-001 protein_coding Danio_rerio 0 966
ENSDART00000130717 ACTN4 (3 of 3)-201 protein_coding Danio_rerio 0 507
ENST00000193403 ACTN1-001 protein_coding Homo_sapiens 0 1421
ENST00000252699 ACTN4-001 protein_coding Homo_sapiens 0 1965
ENST00000376839 ACTN1-007 protein_coding Homo_sapiens 0 1341
ENST00000390009 ACTN4-010 protein_coding Homo_sapiens 0 942
ENST00000394419 ACTN1-005 protein_coding Homo_sapiens 0 1421
ENST00000424234 ACTN4-201 protein_coding Homo_sapiens 0 339
ENST00000438964 ACTN1-002 protein_coding Homo_sapiens 0 1421
ENST00000489451 ACTN4-003 processed_transcript Homo_sapiens 0 276
ENST00000495553 ACTN4-002 processed_transcript Homo_sapiens 0 643
ENST00000502692 ACTN3-003 protein_coding Homo_sapiens 0 955
ENST00000511191 ACTN3-005 nonsense_mediated_decay Homo_sapiens 3e-21 106
ENST00000513398 ACTN3-001 protein_coding Homo_sapiens 0 1053
ENST00000538545 ACTN1-006 protein_coding Homo_sapiens 0 1421
ENST00000586538 ACTN4-012 protein_coding Homo_sapiens 0 741
ENST00000588618 ACTN4-007 retained_intron Homo_sapiens 0 1825
ENST00000589528 ACTN4-013 protein_coding Homo_sapiens 0 363

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