C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429734 NPM1P25-001 ENSG00000229417 9606 - 10:96189366-96190219 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000429734
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000429734 0.050±0.00 1.258±0.00 1.006±0.00 0.115±0.06 0.365±0.24 0.920±0.56 0.073±0.05 0.401±0.00 0.399±0.04 0.137±0.12 0.104±0.00 0.349±0.33 0.462±0.32 0.168±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071R CIL_00071R_0002 CGP 10:96043394-96205288
CIL_0001C3 CIL_0001C3_0002 CGP 10:96129715-96271587

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 968
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 848
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 817
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 817
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 815
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 688
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 617
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 219
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 1e-35 154

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