C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDC-like kinase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000432425 CLK1-003 ENSG00000013441 9606 - 2:200853081-200864656 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverOvaryPlacentaTestisENST00000432425
Transcript ID Adipose Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000432425 6.600±0.00 3.138±0.00 7.416±0.00 7.690±0.00 5.332±0.00 2.358±0.00 9.815±3.17 3.543±0.17 10.460±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002AX CIL_0002AX_0001 CGP 2:200810594-200864744
CIL_0002AY CIL_0002AY_0001 CGP 2:200853009-200889303

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004674 IDA protein serine/threonine kinase activity
GO:0004712 IEA protein serine/threonine/tyrosine kinase activity
GO:0004715 TAS non-membrane spanning protein tyrosine kinase activity
GO:0005524 IEA ATP binding
GO:0008283 TAS cell proliferation
GO:0043484 IMP regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000148330 Clk1-004 nonsense_mediated_decay Mus_musculus 0 1609
ENSMUST00000156931 Clk1-002 retained_intron Mus_musculus 0 1280
ENSMUST00000034868 Clk1-001 protein_coding Mus_musculus 0 1279
ENSMUST00000151338 Clk1-005 nonsense_mediated_decay Mus_musculus 0 828
ENSMUST00000123580 Clk1-006 retained_intron Mus_musculus 0 824
ENSMUST00000186552 Clk1-013 retained_intron Mus_musculus 0 595
ENSMUST00000141570 Clk1-010 processed_transcript Mus_musculus 0 420
ENSMUST00000131051 Clk1-012 retained_intron Mus_musculus 0 361
ENSMUST00000135380 Clk1-008 retained_intron Mus_musculus 0 357
ENSMUST00000129303 Clk1-009 processed_transcript Mus_musculus 0 315
ENSMUST00000129577 Clk1-003 retained_intron Mus_musculus 0 265

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