C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDC-like kinase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034868 Clk1-001 ENSMUSG00000026034 10090 - 1:58412000-58424066 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034868
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034868 10.212±2.30 3.739±1.33 54.530±20.61 19.559±3.88 8.402±1.96 7.251±1.24 6.186±1.16 7.836±3.26 21.893±14.96 17.832±5.94 7.767±2.28 21.205±18.85 28.930±4.75 2.927±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002AX CIL_0002AX_0002 CGP 1:58392898-58424066
CIL_0002AY CIL_0002AY_0002 CGP 1:58410189-58445486

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004674 IDA protein serine/threonine kinase activity
GO:0004712 IEA protein serine/threonine/tyrosine kinase activity
GO:0004713 IDA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0018105 IDA peptidyl-serine phosphorylation
GO:0018107 IDA peptidyl-threonine phosphorylation
GO:0018108 IDA peptidyl-tyrosine phosphorylation
GO:0043484 IEA regulation of RNA splicing
GO:0046777 IDA protein autophosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316308 CLK4-001 protein_coding Homo_sapiens 0 758
ENST00000321356 CLK1-001 protein_coding Homo_sapiens 0 1766
ENST00000409403 CLK1-006 nonsense_mediated_decay Homo_sapiens 0 1258
ENST00000409769 CLK1-005 protein_coding Homo_sapiens 0 1186
ENST00000432425 CLK1-003 nonsense_mediated_decay Homo_sapiens 0 1279
ENST00000434813 CLK1-007 protein_coding Homo_sapiens 0 1764
ENST00000461981 CLK1-002 retained_intron Homo_sapiens 0 824
ENST00000473565 CLK1-004 retained_intron Homo_sapiens 0 1279
ENST00000496205 CLK1-014 retained_intron Homo_sapiens 0 375
ENST00000519132 CLK4-008 retained_intron Homo_sapiens 0.000000002 69
ENST00000519583 CLK4-013 retained_intron Homo_sapiens 0 621
ENST00000520199 CLK4-006 retained_intron Homo_sapiens 1e-30 137
ENST00000520878 CLK4-005 retained_intron Homo_sapiens 0 758
ENST00000521621 CLK4-003 nonsense_mediated_decay Homo_sapiens 0 758
ENST00000522136 CLK4-009 nonsense_mediated_decay Homo_sapiens 1e-39 169
ENST00000611575 CLK4-201 protein_coding Homo_sapiens 0 448
ENST00000611733 CLK4-202 protein_coding Homo_sapiens 0 436
ENST00000621181 CLK1-201 protein_coding Homo_sapiens 0 1279

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