C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 3 pseudogene 24
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000433260 HMGB3P24-001 ENSG00000215283 9606 - 9:36303499-36304924 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000433260
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000433260 0.224±0.00 0.981±0.00 0.331±0.22 0.410±0.28 0.066±0.00 0.022±0.00 0.120±0.00 0.134±0.00 0.145±0.00 0.215±0.00 0.289±0.16 0.114±0.07 0.626±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K2 CIL_0006K2_0001 CGP 9:36169394-36304781
CIL_0006K3 CIL_0006K3_0001 CGP 9:36190856-36304781
CIL_0006K4 CIL_0006K4_0001 CGP 9:36214441-36487548

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088874 Hmgb3-004 protein_coding Mus_musculus 0 701
ENSMUST00000114582 Hmgb3-003 protein_coding Mus_musculus 0 701
ENSMUST00000015361 Hmgb3-002 protein_coding Mus_musculus 0 701
ENSMUST00000072699 Hmgb3-001 protein_coding Mus_musculus 0 701
ENSMUST00000078030 Gm6104-201 protein_coding Mus_musculus 0 693
ENSMUST00000132145 Hmgb3-006 retained_intron Mus_musculus 0 675
ENSMUST00000121238 Gm11805-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000120072 Gm5060-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000123100 Hmgb3-005 protein_coding Mus_musculus 0 568
ENSMUST00000117931 Gm12365-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000117806 Gm15576-001 processed_pseudogene Mus_musculus 0 496

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