C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15576
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117806 Gm15576-001 ENSMUSG00000084157 10090 + 6:100726234-100726760 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastOvaryENSMUST00000117806
Transcript ID Bladder Brain Breast Ovary
ENSMUST00000117806 0.115±0.00 0.039±0.00 0.276±0.00 0.189±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00059P CIL_00059P_0003 CGP 6:100573081-100805081
CIL_00059V CIL_00059V_0003 CGP 6:100704734-100868717

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325307 HMGB3-001 protein_coding Homo_sapiens 0 579
ENST00000393368 HMGB3P1-001 processed_pseudogene Homo_sapiens 0 440
ENST00000403971 HMGB3P19-001 processed_pseudogene Homo_sapiens 0 364
ENST00000411913 HMGB3P2-001 processed_pseudogene Homo_sapiens 0 409
ENST00000413333 HMGB3P31-001 processed_pseudogene Homo_sapiens 0 468
ENST00000417997 HMGB3P20-001 processed_pseudogene Homo_sapiens 0 479
ENST00000419110 HMGB3-002 protein_coding Homo_sapiens 0 579
ENST00000430118 HMGB3-004 protein_coding Homo_sapiens 0 483
ENST00000433260 HMGB3P24-001 processed_pseudogene Homo_sapiens 0 496
ENST00000440127 HMGB3P11-001 processed_pseudogene Homo_sapiens 0 481
ENST00000441799 HMGB3P9-001 processed_pseudogene Homo_sapiens 0 379
ENST00000442010 HMGB3P22-002 processed_transcript Homo_sapiens 0 278
ENST00000444896 HMGB3P6-001 processed_pseudogene Homo_sapiens 0 549
ENST00000448905 HMGB3-201 protein_coding Homo_sapiens 0 579
ENST00000449709 HMGB3P8-001 processed_pseudogene Homo_sapiens 0 459
ENST00000451823 HMGB3P22-001 transcribed_processed_pseudogene Homo_sapiens 0 433
ENST00000455596 HMGB3-003 protein_coding Homo_sapiens 0 579
ENST00000457863 HMGB3P30-001 processed_pseudogene Homo_sapiens 0 481
ENST00000507326 HMGB3P15-001 processed_pseudogene Homo_sapiens 0 501
ENST00000510526 HMGB3P3-001 processed_pseudogene Homo_sapiens 0 200
ENST00000511263 HMGB3P13-001 processed_pseudogene Homo_sapiens 0 257
ENST00000528472 CTD-2028E8.1-001 processed_pseudogene Homo_sapiens 0 331
ENST00000588063 RP11-861E21.3-001 processed_pseudogene Homo_sapiens 0 464
ENST00000589177 HMGB3P27-001 processed_pseudogene Homo_sapiens 0 483

Loading