C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434254 AC008072.1-001 ENSG00000228681 9606 + 2:224294930-224295753 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryTestisENST00000434254
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000434254 0.103±0.00 0.354±0.00 0.276±0.00 0.145±0.00 0.188±0.00 0.229±0.00 0.230±0.00 0.139±0.00 0.547±0.00 0.159±0.00 0.139±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XO CIL_0006XO_0001 CGP 2:223975112-224402085

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078766 Rps27a-ps2-001 processed_pseudogene Mus_musculus 1e-35 154
ENSMUST00000102844 Rps27a-004 protein_coding Mus_musculus 1e-35 154
ENSMUST00000102845 Rps27a-003 protein_coding Mus_musculus 1e-35 154
ENSMUST00000119780 Gm8430-001 processed_pseudogene Mus_musculus 7e-34 148
ENSMUST00000181136 Gm27018-001 processed_pseudogene Mus_musculus 7e-34 148
ENSMUST00000160015 Gm16139-001 processed_pseudogene Mus_musculus 1e-20 104
ENSMUST00000150739 Rps27a-005 processed_transcript Mus_musculus 1e-20 104
ENSMUST00000117540 Gm13428-001 processed_pseudogene Mus_musculus 2e-18 97
ENSMUST00000143418 Rps27a-001 processed_transcript Mus_musculus 0.0000000000002 81

Loading