C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 8430
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119780 Gm8430-001 ENSMUSG00000055093 10090 + 6:122456904-122457374 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119780
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119780 0.515±0.28 2.013±1.88 1.204±1.00 0.483±0.12 0.560±0.36 1.104±0.24 1.430±0.42 9.438±12.34 0.903±0.51 1.697±0.59 0.638±0.47 0.266±0.15 0.733±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0002 VISTA 6:122092605-122696323

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272317 RPS27A-001 protein_coding Homo_sapiens 0 669
ENST00000329806 RP11-558O12.1-001 processed_pseudogene Homo_sapiens 0 466
ENST00000402285 RPS27A-003 protein_coding Homo_sapiens 0 669
ENST00000402798 RP11-367G18.2-001 processed_pseudogene Homo_sapiens 0 560
ENST00000404735 RPS27A-002 protein_coding Homo_sapiens 0 669
ENST00000422792 AC079807.3-001 processed_pseudogene Homo_sapiens 0 407
ENST00000429552 RP4-814D15.2-001 processed_pseudogene Homo_sapiens 0 542
ENST00000434254 AC008072.1-001 processed_pseudogene Homo_sapiens 7e-34 148
ENST00000443181 MIR4426-001 processed_pseudogene Homo_sapiens 0 623
ENST00000447672 RP11-28P17.3-001 processed_pseudogene Homo_sapiens 0 420
ENST00000449323 RPS27A-004 protein_coding Homo_sapiens 0 460
ENST00000452665 RP11-423E7.1-001 processed_pseudogene Homo_sapiens 0 268
ENST00000453803 RPS27AP3-001 processed_pseudogene Homo_sapiens 0 497
ENST00000457576 RPS27AP2-001 processed_pseudogene Homo_sapiens 0 573
ENST00000468810 RPS27A-010 retained_intron Homo_sapiens 0 222
ENST00000471772 RPS27A-009 retained_intron Homo_sapiens 4e-34 148
ENST00000475545 RPS27AP1-001 processed_pseudogene Homo_sapiens 0 542
ENST00000477681 CTD-2015H6.2-001 processed_pseudogene Homo_sapiens 0 424
ENST00000478196 RPS27A-008 retained_intron Homo_sapiens 0 472
ENST00000492222 RP11-51O6.1-001 transcribed_processed_pseudogene Homo_sapiens 0 673
ENST00000494756 RPS27A-012 retained_intron Homo_sapiens 4e-34 148
ENST00000495843 RPS27A-005 retained_intron Homo_sapiens 0 279
ENST00000498403 RP11-1070A24.1-001 processed_pseudogene Homo_sapiens 0 252
ENST00000515536 RP11-166J22.1-001 processed_pseudogene Homo_sapiens 0 403
ENST00000591758 RP11-51O6.1-002 processed_transcript Homo_sapiens 0 673
ENST00000597285 CTD-3214H19.12-001 processed_pseudogene Homo_sapiens 0 394
ENST00000611893 RPS27A-201 protein_coding Homo_sapiens 0 279

Loading