C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102845 Rps27a-003 ENSMUSG00000020460 10090 - 11:29545846-29548109 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102845
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102845 47.153±23.99 1.860±0.89 292.559±68.20 155.240±23.93 18.896±3.48 30.158±5.62 28.045±2.11 32.570±5.50 199.023±206.97 35.135±4.89 58.730±11.49 45.648±62.64 207.923±107.53 38.710±1.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006412 IEA translation
GO:0008150 ND biological_process
GO:0015935 IEA small ribosomal subunit
GO:0016020 IEA membrane
GO:0022627 IEA cytosolic small ribosomal subunit
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272317 RPS27A-001 protein_coding Homo_sapiens 0 743
ENST00000329806 RP11-558O12.1-001 processed_pseudogene Homo_sapiens 0 472
ENST00000402285 RPS27A-003 protein_coding Homo_sapiens 0 689
ENST00000402798 RP11-367G18.2-001 processed_pseudogene Homo_sapiens 0 566
ENST00000404735 RPS27A-002 protein_coding Homo_sapiens 0 702
ENST00000422792 AC079807.3-001 processed_pseudogene Homo_sapiens 0 412
ENST00000429552 RP4-814D15.2-001 processed_pseudogene Homo_sapiens 0 547
ENST00000434254 AC008072.1-001 processed_pseudogene Homo_sapiens 1e-35 154
ENST00000443181 MIR4426-001 processed_pseudogene Homo_sapiens 0 628
ENST00000447672 RP11-28P17.3-001 processed_pseudogene Homo_sapiens 0 425
ENST00000449323 RPS27A-004 protein_coding Homo_sapiens 0 481
ENST00000452665 RP11-423E7.1-001 processed_pseudogene Homo_sapiens 0 274
ENST00000453803 RPS27AP3-001 processed_pseudogene Homo_sapiens 0 503
ENST00000457576 RPS27AP2-001 processed_pseudogene Homo_sapiens 0 579
ENST00000468810 RPS27A-010 retained_intron Homo_sapiens 0 228
ENST00000471772 RPS27A-009 retained_intron Homo_sapiens 0 191
ENST00000475545 RPS27AP1-001 processed_pseudogene Homo_sapiens 0 547
ENST00000477681 CTD-2015H6.2-001 processed_pseudogene Homo_sapiens 0 429
ENST00000478196 RPS27A-008 retained_intron Homo_sapiens 0 512
ENST00000492222 RP11-51O6.1-001 transcribed_processed_pseudogene Homo_sapiens 0 678
ENST00000494756 RPS27A-012 retained_intron Homo_sapiens 8.99998e-41 171
ENST00000495843 RPS27A-005 retained_intron Homo_sapiens 0 302
ENST00000498403 RP11-1070A24.1-001 processed_pseudogene Homo_sapiens 0 252
ENST00000515536 RP11-166J22.1-001 processed_pseudogene Homo_sapiens 0 398
ENST00000591758 RP11-51O6.1-002 processed_transcript Homo_sapiens 0 704
ENST00000597285 CTD-3214H19.12-001 processed_pseudogene Homo_sapiens 0 399
ENST00000611893 RPS27A-201 protein_coding Homo_sapiens 0 342

Loading