C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 3 pseudogene 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434734 HMGB3P10-001 ENSG00000223656 9606 + 1:99698242-99699178 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000434734
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000434734 0.042±0.00 0.022±0.00 0.692±0.00 0.141±0.00 0.195±0.00 0.022±0.00 0.195±0.10 0.347±0.00 0.051±0.00 0.048±0.02 0.033±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078030 Gm6104-201 protein_coding Mus_musculus 0 571
ENSMUST00000088874 Hmgb3-004 protein_coding Mus_musculus 0 566
ENSMUST00000114582 Hmgb3-003 protein_coding Mus_musculus 0 566
ENSMUST00000015361 Hmgb3-002 protein_coding Mus_musculus 0 566
ENSMUST00000072699 Hmgb3-001 protein_coding Mus_musculus 0 566
ENSMUST00000132145 Hmgb3-006 retained_intron Mus_musculus 0 553
ENSMUST00000121238 Gm11805-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000120072 Gm5060-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000117931 Gm12365-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000155930 Gm8813-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000176139 Gm18367-001 processed_pseudogene Mus_musculus 0 407
ENSDART00000128242 hmgb3b-002 protein_coding Danio_rerio 2e-27 126
ENSDART00000024750 hmgb3b-001 protein_coding Danio_rerio 2e-27 126

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