C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8813
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155930 Gm8813-001 ENSMUSG00000085625 10090 - 3:84552858-84553452 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainKidneyLiverLungPlacentaTestisENSMUST00000155930
Transcript ID Adipose Bladder Brain Kidney Liver Lung Placenta Testis
ENSMUST00000155930 0.093±0.01 0.140±0.08 0.071±0.04 0.099±0.00 0.018±0.01 0.122±0.00 0.130±0.04 0.138±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064N CIL_00064N_0002 CGP 3:84444035-85887516
CIL_0004PH CIL_0004PH_0002 CGP 3:84496093-85887516

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325307 HMGB3-001 protein_coding Homo_sapiens 0 647
ENST00000344581 KLHL33-001 protein_coding Homo_sapiens 0.000003 58
ENST00000393368 HMGB3P1-001 processed_pseudogene Homo_sapiens 0 442
ENST00000411913 HMGB3P2-001 processed_pseudogene Homo_sapiens 0 446
ENST00000417997 HMGB3P20-001 processed_pseudogene Homo_sapiens 0 507
ENST00000419110 HMGB3-002 protein_coding Homo_sapiens 0 619
ENST00000430118 HMGB3-004 protein_coding Homo_sapiens 0 512
ENST00000434734 HMGB3P10-001 processed_pseudogene Homo_sapiens 0 429
ENST00000440127 HMGB3P11-001 processed_pseudogene Homo_sapiens 0 494
ENST00000441799 HMGB3P9-001 processed_pseudogene Homo_sapiens 0 370
ENST00000442010 HMGB3P22-002 processed_transcript Homo_sapiens 0 313
ENST00000444896 HMGB3P6-001 processed_pseudogene Homo_sapiens 0 604
ENST00000448905 HMGB3-201 protein_coding Homo_sapiens 0 647
ENST00000451823 HMGB3P22-001 transcribed_processed_pseudogene Homo_sapiens 0 484
ENST00000455596 HMGB3-003 protein_coding Homo_sapiens 0 641
ENST00000511263 HMGB3P13-001 processed_pseudogene Homo_sapiens 0 263
ENST00000528472 CTD-2028E8.1-001 processed_pseudogene Homo_sapiens 0 372
ENST00000588063 RP11-861E21.3-001 processed_pseudogene Homo_sapiens 0 505
ENST00000589177 HMGB3P27-001 processed_pseudogene Homo_sapiens 0 518

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