C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 53
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441603 HNRNPA1P53-001 ENSG00000229534 9606 - 11:5571247-5572192 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000441603
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000441603 0.014±0.00 0.173±0.00 0.167±0.00 0.029±0.00 0.029±0.00 0.053±0.00 0.069±0.01 0.208±0.15 0.051±0.00 0.076±0.02 0.057±0.00 0.067±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PR CIL_0007PR_0001 VISTA 11:4975331-5576811
CIL_0003R8 CIL_0003R8_0002 CGP 11:5248083-5645789

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1098
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1096
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1044
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1018
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 1014
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 1009
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 839
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 839
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 832
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 815
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 641
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 409

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