C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450070 NPM1P19-001 ENSG00000223864 9606 - 20:38977711-38978422 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverMuscleOvaryTestisENST00000450070
Transcript ID Brain Colon Heart Liver Muscle Ovary Testis
ENST00000450070 0.048±0.00 0.305±0.28 0.015±0.00 0.055±0.00 0.015±0.00 0.416±0.38 0.020±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LA CIL_0002LA_0001 CGP 20:38926312-39039723
CIL_0008O6 CIL_0008O6_0001 VISTA 20:38948171-39548957
CIL_0006RV CIL_0006RV_0002 CGP 20:38962299-40689240

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 569
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 510
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 510
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 510
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 510
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000144089 Zfp605-002 processed_transcript Mus_musculus 4e-30 135

Loading