C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 42 pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000458343 KRT42P-003 ENSG00000214514 9606 - 17:41627887-41630592 transcribed_unprocessed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LungOvaryENST00000458343
Transcript ID Lung Ovary
ENST00000458343 0.609±0.00 0.426±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TT CIL_0000TT_0002 CGP 17:41619437-41692668

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017270 Krt42-001 protein_coding Mus_musculus 0 387
ENSMUST00000007272 Krt14-001 protein_coding Mus_musculus 0 370
ENSMUST00000137265 Krt14-002 processed_transcript Mus_musculus 0 370
ENSMUST00000080893 Krt17-001 protein_coding Mus_musculus 0 337
ENSMUST00000107406 Krt42-002 retained_intron Mus_musculus 0 309
ENSMUST00000007280 Krt16-001 protein_coding Mus_musculus 1e-30 137
ENSMUST00000126460 Krt19-002 processed_transcript Mus_musculus 0.0000000004 69
ENSMUST00000007317 Krt19-001 protein_coding Mus_musculus 0.0000000004 69

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