C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479116 RP11-73B8.1-001 ENSG00000241251 9606 - 12:43560784-43561297 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonLungMuscleOvaryTestisENST00000479116
Transcript ID Adipose Adrenal Brain Colon Lung Muscle Ovary Testis
ENST00000479116 0.083±0.00 0.174±0.00 0.058±0.00 0.107±0.00 0.056±0.00 0.026±0.00 0.047±0.00 0.026±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006R3 CIL_0006R3_0001 CGP 12:43353866-43758817

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 427
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 420
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000120348 Gm12123-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000120458 Gm7071-001 processed_pseudogene Mus_musculus 0 215
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 189
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 2e-36 156
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 5e-33 145

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