C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L30 pseudogene 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479312 RPL30P7-001 ENSG00000244361 9606 + 5:10488820-10489142 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLungMuscleOvaryTestisENST00000479312
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000479312 0.043±0.00 0.458±0.00 0.046±0.00 0.085±0.00 0.041±0.00 0.181±0.00 0.212±0.00 0.156±0.00 0.671±0.00 0.127±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VT CIL_0006VT_0002 CGP 5:10441524-10650196

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122265 Rpl30-ps9-001 processed_pseudogene Mus_musculus 0 207
ENSMUST00000119767 Rpl30-ps1-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000118307 Gm12191-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000117119 Rpl30-ps10-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000076166 Rpl30-ps8-201 processed_pseudogene Mus_musculus 0 202
ENSMUST00000142643 Rpl30-005 processed_transcript Mus_musculus 0 202
ENSMUST00000009039 Rpl30-002 protein_coding Mus_musculus 0 202
ENSMUST00000079735 Rpl30-001 protein_coding Mus_musculus 0 202
ENSMUST00000118664 Gm7429-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000071536 Gm6570-201 processed_pseudogene Mus_musculus 0 196
ENSMUST00000096279 Gm10343-201 processed_pseudogene Mus_musculus 0 191
ENSMUST00000136653 Rpl30-006 retained_intron Mus_musculus 1.96182e-44 182
ENSMUST00000135417 Rpl30-003 retained_intron Mus_musculus 4e-32 141

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