C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480540 RP11-112J1.1-001 ENSG00000213598 9606 + 14:58794654-58795029 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000480540
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000480540 0.120±0.00 0.084±0.00 0.189±0.00 0.044±0.00 0.104±0.06 0.119±0.00 0.043±0.00 0.152±0.00 0.121±0.00 0.074±0.00 0.871±0.46 0.408±0.00 0.106±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Q5 CIL_0007Q5_0001 VISTA 14:58571064-59171064
CIL_0001K5 CIL_0001K5_0001 CGP 14:58633967-59371405

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086596 Rpl31-ps9-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000181935 Rpl31-ps8-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000179954 Rpl31-203 protein_coding Mus_musculus 0 453
ENSMUST00000178079 Rpl31-202 protein_coding Mus_musculus 0 453
ENSMUST00000086535 Rpl31-201 protein_coding Mus_musculus 0 453
ENSMUST00000119898 Rpl31-ps11-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000181130 Rpl31-ps16-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000119957 Rpl31-ps12-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000143596 Rpl31-ps14-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000060994 Rpl31-ps13-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000097040 Rpl31-ps17-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000080982 Rpl31-ps20-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000085128 Rpl31-ps1-201 processed_pseudogene Mus_musculus 0 403
ENSMUST00000079114 Rpl31-ps4-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000181857 Rpl31-ps15-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000180629 Rpl31-ps7-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000180929 Rp31-ps19-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000181182 Rpl31-ps21-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000117961 Rpl31-ps22-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000181557 Rpl31-ps25-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000191416 RP23-416O18.2-001 processed_pseudogene Mus_musculus 0 285

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