C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L31, pseudogene 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097040 Rpl31-ps17-001 ENSMUSG00000072255 10090 - 12:54701329-54701706 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000097040
Transcript ID Adipose Bladder Brain Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000097040 0.528±0.06 0.294±0.01 0.067±0.06 0.161±0.01 0.190±0.12 0.181±0.00 0.958±0.07 0.300±0.13 0.150±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RR CIL_0008RR_0002 VISTA 12:54232609-54834941
CIL_0005RF CIL_0005RF_0003 CGP 12:54670340-54795703

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000075402 rpl31-201 protein_coding Danio_rerio 0 261
ENSDART00000149851 rpl31-002 protein_coding Danio_rerio 0 261
ENSDART00000149554 rpl31-001 protein_coding Danio_rerio 0 261
ENSDART00000148688 rpl31-003 retained_intron Danio_rerio 0 239
ENSDART00000148984 rpl31-004 retained_intron Danio_rerio 4e-23 111
ENST00000264258 RPL31-001 protein_coding Homo_sapiens 0 483
ENST00000406329 RPL31P28-001 processed_pseudogene Homo_sapiens 0 313
ENST00000409000 RPL31-006 protein_coding Homo_sapiens 0 339
ENST00000409028 RPL31-007 protein_coding Homo_sapiens 0 429
ENST00000409038 RPL31-008 protein_coding Homo_sapiens 0 431
ENST00000409320 RPL31-002 protein_coding Homo_sapiens 0 429
ENST00000409650 RPL31-009 protein_coding Homo_sapiens 0 433
ENST00000409711 RPL31-004 protein_coding Homo_sapiens 0 339
ENST00000409733 RPL31-010 protein_coding Homo_sapiens 0 483
ENST00000419276 RPL31-003 nonsense_mediated_decay Homo_sapiens 0 339
ENST00000422565 RPL31P63-001 processed_pseudogene Homo_sapiens 0 422
ENST00000426558 RPL31P11-002 processed_transcript Homo_sapiens 0 399
ENST00000427776 RP11-458F8.3-001 processed_pseudogene Homo_sapiens 0 324
ENST00000431058 RPL31P35-001 processed_pseudogene Homo_sapiens 0 387
ENST00000431088 AC016712.2-001 processed_pseudogene Homo_sapiens 0 433
ENST00000441435 RPL31-011 protein_coding Homo_sapiens 0 372
ENST00000441577 RP11-560I19.2-001 processed_pseudogene Homo_sapiens 0 374
ENST00000447680 RP11-346D6.4-001 processed_pseudogene Homo_sapiens 0 381
ENST00000449702 AC104306.1-001 processed_pseudogene Homo_sapiens 0 348
ENST00000454082 RPL31P11-001 transcribed_processed_pseudogene Homo_sapiens 0 399
ENST00000455434 RP11-420H19.3-001 processed_pseudogene Homo_sapiens 0 351
ENST00000456292 RPL31-005 protein_coding Homo_sapiens 0 429
ENST00000462248 RP11-147I3.1-001 transcribed_processed_pseudogene Homo_sapiens 0 355
ENST00000480540 RP11-112J1.1-001 processed_pseudogene Homo_sapiens 0 425
ENST00000487111 RP11-147I3.1-003 processed_transcript Homo_sapiens 0 243
ENST00000490759 RPL31P49-001 processed_pseudogene Homo_sapiens 0 407
ENST00000498412 RP1-102E24.1-001 processed_pseudogene Homo_sapiens 0 425
ENST00000518463 RP11-267M23.6-001 processed_pseudogene Homo_sapiens 0 296
ENST00000525104 RP11-147I3.1-002 processed_transcript Homo_sapiens 0 355
ENST00000529570 RP11-147I3.1-004 processed_transcript Homo_sapiens 0 355

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