C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S18 pseudogene 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000482817 RPS18P9-001 ENSG00000220848 9606 + 6:149594084-149594543 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000482817
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000482817 3.732±0.00 3.126±0.00 1.148±0.00 0.951±0.49 3.604±0.48 2.366±0.00 1.116±0.00 1.919±0.00 1.054±0.06 3.141±1.48 1.686±0.38 3.398±1.38 1.829±0.39 2.349±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030H CIL_00030H_0002 CGP 6:149566294-149648972

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008812 Rps18-001 protein_coding Mus_musculus 0 525
ENSMUST00000174745 Rps18-011 processed_transcript Mus_musculus 0 521
ENSMUST00000077163 Gm11361-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000074072 Gm10260-201 protein_coding Mus_musculus 0 514
ENSMUST00000080443 Rps18-ps3-201 protein_coding Mus_musculus 0 505
ENSMUST00000120838 Rps18-ps1-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000174609 Rps18-006 protein_coding Mus_musculus 0 431
ENSMUST00000072050 Gm5321-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000174620 Rps18-012 retained_intron Mus_musculus 0 405
ENSMUST00000172799 Rps18-002 processed_transcript Mus_musculus 0 398
ENSMUST00000121730 Gm15696-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000174758 Rps18-008 retained_intron Mus_musculus 0 396
ENSMUST00000174175 Rps18-005 retained_intron Mus_musculus 0 370

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