C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13a pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000487479 RPL13AP3-001 ENSG00000177350 9606 + 14:55766177-55766790 transcribed_processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMusclePlacentaENST00000487479
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta
ENST00000487479 0.303±0.00 0.881±0.00 0.089±0.00 0.271±0.00 0.143±0.00 0.038±0.00 0.216±0.00 0.077±0.00 0.458±0.00 0.652±0.00 0.112±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000604 CIL_000604_0002 CGP 14:55559072-56301526

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150350 Rpl13a-001 protein_coding Mus_musculus 0 601
ENSMUST00000124300 Rpl13a-011 protein_coding Mus_musculus 0 586
ENSMUST00000117851 Gm11478-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000102669 Rpl13a-009 nonsense_mediated_decay Mus_musculus 0 549
ENSMUST00000125074 Rpl13a-006 processed_transcript Mus_musculus 0 534
ENSMUST00000118217 Gm6023-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000071866 Rpl13a-ps1-201 protein_coding Mus_musculus 0 507
ENSMUST00000125936 Rpl13a-008 retained_intron Mus_musculus 0 355
ENSMUST00000152970 Rpl13a-003 retained_intron Mus_musculus 0 279
ENSMUST00000142239 Rpl13a-010 processed_transcript Mus_musculus 0 220

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