C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21 pseudogene 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488305 RPL21P13-001 ENSG00000242837 9606 + 14:103241492-103241972 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungMuscleOvaryPlacentaTestisENST00000488305
Transcript ID Adrenal Breast Colon Lung Muscle Ovary Placenta Testis
ENST00000488305 0.099±0.00 0.034±0.00 0.093±0.00 0.614±0.00 0.030±0.00 0.108±0.00 0.047±0.00 0.086±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001AI CIL_0001AI_0002 CGP 14:103123442-103345025

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 436
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 436
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 436
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 436
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 414
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 412
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 407
ENSMUST00000080223 Rpl21-ps3-201 processed_pseudogene Mus_musculus 0 399
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 387
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000120348 Gm12123-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000121662 Gm14053-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 268
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 9.80909e-45 183
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 1e-34 150
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 8e-16 88

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