C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8840
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122454 Gm8840-001 ENSMUSG00000084332 10090 - 1:69130914-69131299 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyPlacentaENSMUST00000122454
Transcript ID Heart Kidney Placenta
ENSMUST00000122454 0.328±0.00 0.168±0.00 0.180±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PA CIL_0006PA_0002 CGP 1:68032186-69687245
CIL_0008VP CIL_0008VP_0002 VISTA 1:68564846-69166697

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272274 RPL21-003 protein_coding Homo_sapiens 0 429
ENST00000311549 RPL21-001 protein_coding Homo_sapiens 0 429
ENST00000319826 RPL21-004 protein_coding Homo_sapiens 0 429
ENST00000326092 RPL21-005 protein_coding Homo_sapiens 0 429
ENST00000396599 RPL21P75-001 processed_pseudogene Homo_sapiens 0 429
ENST00000401418 RPL21P28-001 processed_pseudogene Homo_sapiens 0 412
ENST00000402896 RPL21P67-001 processed_pseudogene Homo_sapiens 0 289
ENST00000404609 RP3-393E18.1-001 processed_pseudogene Homo_sapiens 0 370
ENST00000406094 RPL21P65-001 processed_pseudogene Homo_sapiens 0 244
ENST00000416622 RP11-329A14.2-001 processed_pseudogene Homo_sapiens 0 285
ENST00000418441 RP11-151F5.2-001 processed_pseudogene Homo_sapiens 0 383
ENST00000422509 RP11-405L18.4-001 processed_pseudogene Homo_sapiens 0 303
ENST00000423231 RP11-26H16.1-001 processed_pseudogene Homo_sapiens 0 390
ENST00000428586 RPL21P40-001 processed_pseudogene Homo_sapiens 0 300
ENST00000434936 RP11-319C21.1-001 processed_pseudogene Homo_sapiens 6e-32 141
ENST00000439130 RP11-244N20.7-001 processed_pseudogene Homo_sapiens 0 303
ENST00000441274 RP11-490K7.1-001 processed_pseudogene Homo_sapiens 0 326
ENST00000446654 RPL21P23-001 processed_pseudogene Homo_sapiens 0 252
ENST00000453468 RPL21P134-001 processed_pseudogene Homo_sapiens 0 381
ENST00000454107 RP11-57G10.1-001 processed_pseudogene Homo_sapiens 0 276
ENST00000454675 AC092155.1-001 processed_pseudogene Homo_sapiens 0 385
ENST00000459863 RPL21P41-001 processed_pseudogene Homo_sapiens 0 270
ENST00000460608 CTD-2301A4.3-001 processed_pseudogene Homo_sapiens 0 331
ENST00000461458 RPL21P11-001 processed_pseudogene Homo_sapiens 0 401
ENST00000461690 RPL21-007 nonsense_mediated_decay Homo_sapiens 0 420
ENST00000465598 RPL21P71-001 processed_pseudogene Homo_sapiens 1e-23 113
ENST00000466550 RPL21-006 retained_intron Homo_sapiens 0 322
ENST00000471393 RP11-400K9.1-001 processed_pseudogene Homo_sapiens 0 292
ENST00000472093 RP11-267J23.1-001 processed_pseudogene Homo_sapiens 0 270
ENST00000472300 RP11-16F15.2-001 processed_pseudogene Homo_sapiens 0 401
ENST00000473558 RPL21-002 retained_intron Homo_sapiens 2.8026e-45 185
ENST00000473808 RP11-254G11.1-001 processed_pseudogene Homo_sapiens 0 377
ENST00000477341 RP11-734J24.1-001 processed_pseudogene Homo_sapiens 0 364
ENST00000482506 RPL21P116-001 processed_pseudogene Homo_sapiens 0 379
ENST00000482905 RPL21P120-001 processed_pseudogene Homo_sapiens 0 399
ENST00000483765 RPL21-008 nonsense_mediated_decay Homo_sapiens 4e-24 115
ENST00000485147 RP11-407P2.1-001 processed_pseudogene Homo_sapiens 0 368
ENST00000485945 RP11-613M5.2-001 processed_pseudogene Homo_sapiens 0 407
ENST00000486753 RP11-48B14.1-001 processed_pseudogene Homo_sapiens 0 407
ENST00000488289 RP13-585F24.1-001 processed_pseudogene Homo_sapiens 0 390
ENST00000488305 RPL21P13-001 processed_pseudogene Homo_sapiens 0 300
ENST00000491435 RP11-50D9.1-001 processed_pseudogene Homo_sapiens 0 412
ENST00000493028 RPL21P123-001 transcribed_processed_pseudogene Homo_sapiens 0 254
ENST00000493317 RPL21-009 protein_coding Homo_sapiens 0 412
ENST00000493466 RP11-9D8.1-001 processed_pseudogene Homo_sapiens 0 392
ENST00000495531 RP11-572P18.1-001 processed_pseudogene Homo_sapiens 0 429
ENST00000497298 RPL21P131-001 processed_pseudogene Homo_sapiens 0 364
ENST00000497954 RPL21P4-001 processed_pseudogene Homo_sapiens 0 370
ENST00000510061 AC006445.7-001 processed_pseudogene Homo_sapiens 0 285
ENST00000515262 HSPA4L-005 processed_transcript Homo_sapiens 0 237
ENST00000557463 RPL21P7-001 processed_pseudogene Homo_sapiens 0 357
ENST00000559810 RPL21P12-001 processed_pseudogene Homo_sapiens 0 320
ENST00000600955 RP1-228H13.1-001 processed_pseudogene Homo_sapiens 0 383
ENST00000610672 MED22-007 protein_coding Homo_sapiens 0 303

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