C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12411
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119140 Gm12411-001 ENSMUSG00000081559 10090 + 4:45550017-45550499 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000119140
Transcript ID Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000119140 0.088±0.00 0.074±0.02 0.207±0.05 0.153±0.05 0.176±0.05 0.225±0.16 0.173±0.00 0.122±0.02 0.364±0.07 0.101±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081A CIL_00081A_0002 VISTA 4:45205842-45807105
CIL_0006TL CIL_0006TL_0002 CGP 4:45423278-45804604
CIL_00086Q CIL_00086Q_0002 VISTA 4:45528456-46131469

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000247219 TBPL2-001 protein_coding Homo_sapiens 0 254
ENST00000272274 RPL21-003 protein_coding Homo_sapiens 0 582
ENST00000311549 RPL21-001 protein_coding Homo_sapiens 0 582
ENST00000319826 RPL21-004 protein_coding Homo_sapiens 0 582
ENST00000326092 RPL21-005 protein_coding Homo_sapiens 0 582
ENST00000395517 RPL21P3-001 processed_pseudogene Homo_sapiens 0 477
ENST00000396599 RPL21P75-001 processed_pseudogene Homo_sapiens 0 577
ENST00000397467 RPL21P17-001 processed_pseudogene Homo_sapiens 0 497
ENST00000401418 RPL21P28-001 processed_pseudogene Homo_sapiens 0 566
ENST00000401964 RP11-569A2.2-001 processed_pseudogene Homo_sapiens 9e-32 139
ENST00000402896 RPL21P67-001 processed_pseudogene Homo_sapiens 0 403
ENST00000403842 RP11-203F10.6-001 processed_pseudogene Homo_sapiens 0 538
ENST00000404609 RP3-393E18.1-001 processed_pseudogene Homo_sapiens 0 505
ENST00000406094 RPL21P65-001 processed_pseudogene Homo_sapiens 0 355
ENST00000416102 AC017079.4-001 processed_pseudogene Homo_sapiens 0 398
ENST00000416622 RP11-329A14.2-001 processed_pseudogene Homo_sapiens 0 407
ENST00000418441 RP11-151F5.2-001 processed_pseudogene Homo_sapiens 0 527
ENST00000422509 RP11-405L18.4-001 processed_pseudogene Homo_sapiens 0 444
ENST00000423231 RP11-26H16.1-001 processed_pseudogene Homo_sapiens 0 516
ENST00000432935 RP5-1068B5.1-001 processed_pseudogene Homo_sapiens 0.00000004 62
ENST00000433345 RPL21P110-001 processed_pseudogene Homo_sapiens 0 300
ENST00000433493 RP5-859M6.1-001 processed_pseudogene Homo_sapiens 0 307
ENST00000439130 RP11-244N20.7-001 processed_pseudogene Homo_sapiens 0 418
ENST00000441274 RP11-490K7.1-001 processed_pseudogene Homo_sapiens 0 411
ENST00000443666 RPL21P133-001 processed_pseudogene Homo_sapiens 0 370
ENST00000446654 RPL21P23-001 processed_pseudogene Homo_sapiens 0 309
ENST00000453468 RPL21P134-001 processed_pseudogene Homo_sapiens 0 521
ENST00000454107 RP11-57G10.1-001 processed_pseudogene Homo_sapiens 0 398
ENST00000454675 AC092155.1-001 processed_pseudogene Homo_sapiens 0 516
ENST00000459863 RPL21P41-001 processed_pseudogene Homo_sapiens 0 289
ENST00000460608 CTD-2301A4.3-001 processed_pseudogene Homo_sapiens 0 440
ENST00000461458 RPL21P11-001 processed_pseudogene Homo_sapiens 0 544
ENST00000461690 RPL21-007 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000463605 RPL21P39-001 processed_pseudogene Homo_sapiens 0 521
ENST00000465083 RPL21P8-001 processed_pseudogene Homo_sapiens 0 254
ENST00000465295 RP11-30K9.1-001 processed_pseudogene Homo_sapiens 0 494
ENST00000465598 RPL21P71-001 processed_pseudogene Homo_sapiens 0 281
ENST00000466550 RPL21-006 retained_intron Homo_sapiens 0 327
ENST00000471393 RP11-400K9.1-001 processed_pseudogene Homo_sapiens 0 403
ENST00000472093 RP11-267J23.1-001 processed_pseudogene Homo_sapiens 0 337
ENST00000472300 RP11-16F15.2-001 processed_pseudogene Homo_sapiens 0 538
ENST00000472975 RP11-112N19.2-001 processed_pseudogene Homo_sapiens 0 501
ENST00000473558 RPL21-002 retained_intron Homo_sapiens 0 196
ENST00000473808 RP11-254G11.1-001 processed_pseudogene Homo_sapiens 0 505
ENST00000477341 RP11-734J24.1-001 processed_pseudogene Homo_sapiens 0 534
ENST00000479171 RPL21P6-001 processed_pseudogene Homo_sapiens 0 254
ENST00000480465 RP11-492M23.2-001 processed_pseudogene Homo_sapiens 0 547
ENST00000482506 RPL21P116-001 processed_pseudogene Homo_sapiens 0 516
ENST00000482905 RPL21P120-001 processed_pseudogene Homo_sapiens 0 486
ENST00000483765 RPL21-008 nonsense_mediated_decay Homo_sapiens 2e-22 110
ENST00000484462 RPL21P119-001 processed_pseudogene Homo_sapiens 0 562
ENST00000485147 RP11-407P2.1-001 processed_pseudogene Homo_sapiens 0 520
ENST00000485217 CTD-2182N23.1-001 processed_pseudogene Homo_sapiens 0 342
ENST00000485945 RP11-613M5.2-001 processed_pseudogene Homo_sapiens 0 553
ENST00000486753 RP11-48B14.1-001 processed_pseudogene Homo_sapiens 0 527
ENST00000487382 CTD-2158P22.1-001 processed_pseudogene Homo_sapiens 0 390
ENST00000488289 RP13-585F24.1-001 processed_pseudogene Homo_sapiens 0 555
ENST00000488305 RPL21P13-001 processed_pseudogene Homo_sapiens 0 425
ENST00000491435 RP11-50D9.1-001 processed_pseudogene Homo_sapiens 0 558
ENST00000491732 RPL21P129-001 processed_pseudogene Homo_sapiens 0 409
ENST00000493028 RPL21P123-001 transcribed_processed_pseudogene Homo_sapiens 0 294
ENST00000493317 RPL21-009 protein_coding Homo_sapiens 0 459
ENST00000493466 RP11-9D8.1-001 processed_pseudogene Homo_sapiens 0 488
ENST00000495531 RP11-572P18.1-001 processed_pseudogene Homo_sapiens 0 582
ENST00000496412 CTD-2290C23.2-001 processed_pseudogene Homo_sapiens 0 460
ENST00000497298 RPL21P131-001 processed_pseudogene Homo_sapiens 0 505
ENST00000497954 RPL21P4-001 processed_pseudogene Homo_sapiens 0 507
ENST00000510061 AC006445.7-001 processed_pseudogene Homo_sapiens 0 411
ENST00000515262 HSPA4L-005 processed_transcript Homo_sapiens 0 254
ENST00000557463 RPL21P7-001 processed_pseudogene Homo_sapiens 0 477
ENST00000559810 RPL21P12-001 processed_pseudogene Homo_sapiens 0 348
ENST00000600955 RP1-228H13.1-001 processed_pseudogene Homo_sapiens 0 518
ENST00000610672 MED22-007 protein_coding Homo_sapiens 0 418

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