C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000509116 RP11-553P9.1-001 ENSG00000250144 9606 + 4:135045464-135046850 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000509116
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000509116 0.624±0.00 0.917±0.00 0.085±0.00 0.258±0.05 0.363±0.33 0.511±0.45 0.052±0.00 0.264±0.23 0.222±0.09 0.301±0.16 0.218±0.00 0.142±0.08 0.083±0.07 0.325±0.24

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042235 Eef1a1-001 protein_coding Mus_musculus 0 1555
ENSMUST00000187672 RP23-307G23.3-001 processed_pseudogene Mus_musculus 0 1471
ENSMUST00000118928 Gm13456-001 processed_pseudogene Mus_musculus 0 1443
ENSMUST00000118650 Gm6767-001 processed_pseudogene Mus_musculus 0 1362
ENSMUST00000161562 Gm5822-001 processed_pseudogene Mus_musculus 0 1284
ENSMUST00000121596 Gm12912-001 processed_pseudogene Mus_musculus 0 1242
ENSMUST00000167498 Gm6548-001 processed_pseudogene Mus_musculus 0 1201
ENSMUST00000144523 Eef1a1-005 retained_intron Mus_musculus 0 893
ENSMUST00000154207 Eef1a1-008 protein_coding Mus_musculus 0 863
ENSMUST00000126614 Eef1a1-006 retained_intron Mus_musculus 0 745
ENSMUST00000156988 Eef1a1-003 protein_coding Mus_musculus 0 641
ENSMUST00000150960 Eef1a1-002 retained_intron Mus_musculus 0 564
ENSMUST00000143570 Eef1a1-007 processed_transcript Mus_musculus 0 507
ENSMUST00000189923 RP23-478L14.1-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000129380 Eef1a1-004 retained_intron Mus_musculus 0 350

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