C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation elongation factor 1 alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042235 Eef1a1-001 ENSMUSG00000037742 10090 - 9:78478449-78481724 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042235
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042235 1397.140±422.62 536.095±168.56 2937.795±141.39 1502.172±780.77 1079.881±458.95 1178.331±494.14 305.828±73.56 1541.375±247.14 1785.707±722.86 1056.142±294.88 118.940±27.01 1381.666±961.05 1506.008±848.89 693.002±282.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PO CIL_0006PO_0002 CGP 9:78448208-78489151
CIL_0006PR CIL_0006PR_0002 CGP 9:78478449-78588041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003746 IEA translation elongation factor activity
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005615 IEA extracellular space
GO:0005634 ISS nucleus
GO:0005730 ISS nucleolus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006414 IEA translational elongation
GO:0016020 IEA membrane
GO:0019901 IEA protein kinase binding
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071364 ISS cellular response to epidermal growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128726 eef1a1a-001 protein_coding Danio_rerio 0 1151
ENSDART00000016121 eef1a1a-002 protein_coding Danio_rerio 0 582
ENST00000309268 EEF1A1-009 protein_coding Homo_sapiens 0 2468
ENST00000316292 EEF1A1-001 protein_coding Homo_sapiens 0 2355
ENST00000325349 EEF1A1P16-001 processed_pseudogene Homo_sapiens 0 1563
ENST00000331523 EEF1A1-004 protein_coding Homo_sapiens 0 2340
ENST00000356303 EEF1A1-015 protein_coding Homo_sapiens 0 647
ENST00000359165 EEF1A1P4-001 processed_pseudogene Homo_sapiens 0 1594
ENST00000395772 EEF1A1P15-001 processed_pseudogene Homo_sapiens 0 756
ENST00000401075 RP11-439L8.2-001 processed_pseudogene Homo_sapiens 0 1057
ENST00000403956 RP3-406A7.1-001 processed_pseudogene Homo_sapiens 0 237
ENST00000415278 EEF1A1P11-001 processed_pseudogene Homo_sapiens 0 1807
ENST00000416082 EEF1A1P29-001 processed_pseudogene Homo_sapiens 0 760
ENST00000417549 EEF1A1P3-001 processed_pseudogene Homo_sapiens 0 1500
ENST00000419025 EEF1A1P8-001 processed_pseudogene Homo_sapiens 0 1639
ENST00000419888 EEF1A1P34-001 processed_pseudogene Homo_sapiens 0 953
ENST00000420064 RP11-175P19.2-001 transcribed_processed_pseudogene Homo_sapiens 0 483
ENST00000421195 EEF1A1P14-001 processed_pseudogene Homo_sapiens 0 1520
ENST00000427807 EEF1A1P36-001 processed_pseudogene Homo_sapiens 0 935
ENST00000429708 EEF1A1P30-001 processed_pseudogene Homo_sapiens 0 1175
ENST00000429983 EEF1A1P27-001 processed_pseudogene Homo_sapiens 0 835
ENST00000430498 RP11-104D3.2-001 processed_pseudogene Homo_sapiens 0 1210
ENST00000430685 RP11-214N15.5-001 processed_pseudogene Homo_sapiens 0 281
ENST00000434005 EEF1A1P6-001 processed_pseudogene Homo_sapiens 0 1903
ENST00000436459 EEF1A1P5-001 processed_pseudogene Homo_sapiens 0 1929
ENST00000443590 EEF1A1P12-001 processed_pseudogene Homo_sapiens 0 894
ENST00000445363 AC010240.2-001 processed_pseudogene Homo_sapiens 0 893
ENST00000447052 EEF1A1P1-001 processed_pseudogene Homo_sapiens 0 708
ENST00000449483 RP11-175P19.2-002 processed_transcript Homo_sapiens 0 326
ENST00000450915 EEF1A1P28-001 processed_pseudogene Homo_sapiens 0 1310
ENST00000451469 EEF1A1P24-001 processed_pseudogene Homo_sapiens 0 1585
ENST00000455918 EEF1A1-003 protein_coding Homo_sapiens 0 460
ENST00000475365 EEF1A1P10-001 processed_pseudogene Homo_sapiens 0 1652
ENST00000488500 EEF1A1-011 retained_intron Homo_sapiens 0 928
ENST00000490569 EEF1A1-008 retained_intron Homo_sapiens 0 1476
ENST00000491404 EEF1A1-014 processed_transcript Homo_sapiens 0 501
ENST00000495333 EEF1A1-002 retained_intron Homo_sapiens 0 726
ENST00000495704 EEF1A1P25-001 processed_pseudogene Homo_sapiens 0 1408
ENST00000503537 EEF1A1P13-001 processed_pseudogene Homo_sapiens 0 1834
ENST00000509116 RP11-553P9.1-001 processed_pseudogene Homo_sapiens 0 1555
ENST00000513637 EEF1A1P19-001 processed_pseudogene Homo_sapiens 0 1772
ENST00000514852 EEF1A1P20-001 processed_pseudogene Homo_sapiens 0 880
ENST00000514975 EEF1A1P9-001 processed_pseudogene Homo_sapiens 0 1825
ENST00000525759 CTD-2063L20.1-001 processed_pseudogene Homo_sapiens 0 592
ENST00000547505 EEF1A1P17-001 processed_pseudogene Homo_sapiens 0 1478
ENST00000553854 RP11-226P1.3-001 processed_pseudogene Homo_sapiens 0 532
ENST00000554413 EEF1A1P33-001 processed_pseudogene Homo_sapiens 0 915
ENST00000559385 EEF1A1P22-001 processed_pseudogene Homo_sapiens 0 1592
ENST00000567658 EEF1A1P38-001 processed_pseudogene Homo_sapiens 0 1580
ENST00000596811 EEF1A1P7-001 processed_pseudogene Homo_sapiens 0 1493
ENST00000605239 AP000436.4-001 processed_pseudogene Homo_sapiens 0 651
ENST00000610520 EEF1A1-201 protein_coding Homo_sapiens 0 1648
ENST00000615060 EEF1A1-202 protein_coding Homo_sapiens 0 2353

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