C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heat shock 60kDa protein 1 (chaperonin) pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000511127 HSPD1P5-001 ENSG00000249193 9606 + 4:144845625-144847344 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000511127
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000511127 0.119±0.00 0.006±0.00 0.035±0.00 0.012±0.00 0.025±0.00 0.108±0.00 0.121±0.09 0.018±0.00 0.013±0.01 0.021±0.00 0.023±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YM CIL_0008YM_0001 VISTA 4:144347096-144948803
CIL_0007O9 CIL_0007O9_0001 UCNEbase 4:144356342-145043587
CIL_0008YN CIL_0008YN_0001 VISTA 4:144638849-145240129

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027123 Hspd1-001 protein_coding Mus_musculus 0 2002
ENSMUST00000119713 Gm12141-001 processed_pseudogene Mus_musculus 0 1988
ENSMUST00000121815 Gm12725-001 processed_pseudogene Mus_musculus 0 1607
ENSMUST00000122013 Gm12608-001 processed_pseudogene Mus_musculus 0 1288
ENSMUST00000121528 Gm14935-001 processed_pseudogene Mus_musculus 0 1099
ENSMUST00000189212 RP23-274N9.1-001 processed_pseudogene Mus_musculus 0 848
ENSMUST00000127861 Hspd1-002 protein_coding Mus_musculus 0 743
ENSMUST00000144077 Hspd1-003 protein_coding Mus_musculus 0 508
ENSMUST00000118299 Gm12667-001 processed_pseudogene Mus_musculus 0 292

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