C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heat shock protein 1 (chaperonin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127861 Hspd1-002 ENSMUSG00000025980 10090 - 1:55083067-55088243 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLungPlacentaENSMUST00000127861
Transcript ID Brain Colon Lung Placenta
ENSMUST00000127861 43.447±0.00 4.694±0.00 5.084±0.77 456.749±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X7 CIL_0007X7_0002 VISTA 1:54604981-55208576
CIL_0002KH CIL_0002KH_0002 CGP 1:55052770-55088243
CIL_00042Q CIL_00042Q_0003 CGP 1:55077835-55091307

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 ISO double-stranded RNA binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0005886 IDA plasma membrane
GO:0030141 IDA secretory granule
GO:0032727 IDA positive regulation of interferon-alpha production
GO:0032729 IDA positive regulation of interferon-gamma production
GO:0042110 IDA T cell activation
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345042 HSPD1-201 protein_coding Homo_sapiens 0 859
ENST00000388967 HSPD1P6-001 transcribed_processed_pseudogene Homo_sapiens 0 737
ENST00000388968 HSPD1-001 protein_coding Homo_sapiens 0 859
ENST00000400121 HSPD1P8-001 processed_pseudogene Homo_sapiens 0 597
ENST00000404829 HSPD1P10-001 processed_pseudogene Homo_sapiens 0 568
ENST00000418022 HSPD1-012 protein_coding Homo_sapiens 0 257
ENST00000420325 HSPD1P9-001 processed_pseudogene Homo_sapiens 0 571
ENST00000426480 HSPD1-009 protein_coding Homo_sapiens 0 566
ENST00000428204 HSPD1-010 protein_coding Homo_sapiens 0 414
ENST00000429127 RP11-69M1.3-001 processed_pseudogene Homo_sapiens 0 749
ENST00000430176 HSPD1-013 protein_coding Homo_sapiens 0 856
ENST00000439605 HSPD1-011 protein_coding Homo_sapiens 0 374
ENST00000440114 HSPD1-007 nonsense_mediated_decay Homo_sapiens 0 610
ENST00000447985 HSPD1P7-001 processed_pseudogene Homo_sapiens 0 619
ENST00000452200 HSPD1-006 protein_coding Homo_sapiens 0 957
ENST00000461097 HSPD1-014 retained_intron Homo_sapiens 0 610
ENST00000476746 HSPD1-008 retained_intron Homo_sapiens 0 730
ENST00000486181 HSPD1-005 retained_intron Homo_sapiens 0 608
ENST00000503199 HSPD1P1-001 processed_pseudogene Homo_sapiens 0 806
ENST00000508643 HSPD1P11-001 processed_pseudogene Homo_sapiens 0 494
ENST00000511127 HSPD1P5-001 processed_pseudogene Homo_sapiens 0 743
ENST00000530524 HSPD1P2-001 processed_pseudogene Homo_sapiens 0 549
ENST00000533477 HSPD1P3-001 processed_pseudogene Homo_sapiens 0 549
ENST00000547203 RP11-153M3.1-001 processed_pseudogene Homo_sapiens 0 782

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