C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heat shock protein 1 (chaperonin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027123 Hspd1-001 ENSMUSG00000025980 10090 - 1:55077835-55088024 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027123
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027123 25.715±0.76 42.630±5.63 33.874±0.04 39.190±0.59 17.316±3.25 9.999±0.81 33.091±3.36 51.256±10.43 97.063±62.31 7.633±1.30 50.137±4.84 38.428±59.84 91.750±55.16 4.220±1.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X7 CIL_0007X7_0002 VISTA 1:54604981-55208576
CIL_0002KH CIL_0002KH_0002 CGP 1:55052770-55088243
CIL_00042Q CIL_00042Q_0003 CGP 1:55077835-55091307

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001530 IDA lipopolysaccharide binding
GO:0002039 IEA p53 binding
GO:0002368 IEA B cell cytokine production
GO:0002755 IEA MyD88-dependent toll-like receptor signaling pathway
GO:0002842 IEA positive regulation of T cell mediated immune response to tumor cell
GO:0003725 ISO double-stranded RNA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005615 IEA extracellular space
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0005769 IEA early endosome
GO:0005829 IEA cytosol
GO:0005886 IDA plasma membrane
GO:0005905 IEA coated pit
GO:0006919 IEA activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006986 IEA response to unfolded protein
GO:0009986 IEA cell surface
GO:0016020 IEA membrane
GO:0019907 IEA cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0030135 IEA coated vesicle
GO:0030141 IDA secretory granule
GO:0032727 IDA positive regulation of interferon-alpha production
GO:0032729 IDA positive regulation of interferon-gamma production
GO:0032733 IEA positive regulation of interleukin-10 production
GO:0032735 IEA positive regulation of interleukin-12 production
GO:0032755 IEA positive regulation of interleukin-6 production
GO:0042100 IEA B cell proliferation
GO:0042110 IDA T cell activation
GO:0042113 IEA B cell activation
GO:0043032 IEA positive regulation of macrophage activation
GO:0043065 IEA positive regulation of apoptotic process
GO:0043066 IEA negative regulation of apoptotic process
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043234 ISS protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0046696 IEA lipopolysaccharide receptor complex
GO:0048291 IEA isotype switching to IgG isotypes
GO:0050870 IDA positive regulation of T cell activation
GO:0051087 IEA chaperone binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345042 HSPD1-201 protein_coding Homo_sapiens 0 2863
ENST00000388966 RP11-69M1.4-001 processed_pseudogene Homo_sapiens 0 704
ENST00000388967 HSPD1P6-001 transcribed_processed_pseudogene Homo_sapiens 0 1916
ENST00000388968 HSPD1-001 protein_coding Homo_sapiens 0 3013
ENST00000400121 HSPD1P8-001 processed_pseudogene Homo_sapiens 0 1506
ENST00000402302 HSPD1P16-001 processed_pseudogene Homo_sapiens 0 388
ENST00000404829 HSPD1P10-001 processed_pseudogene Homo_sapiens 0 1432
ENST00000418022 HSPD1-012 protein_coding Homo_sapiens 0 257
ENST00000420325 HSPD1P9-001 processed_pseudogene Homo_sapiens 0 966
ENST00000426480 HSPD1-009 protein_coding Homo_sapiens 0 566
ENST00000428204 HSPD1-010 protein_coding Homo_sapiens 0 414
ENST00000429127 RP11-69M1.3-001 processed_pseudogene Homo_sapiens 0 1230
ENST00000430176 HSPD1-013 protein_coding Homo_sapiens 0 955
ENST00000439605 HSPD1-011 protein_coding Homo_sapiens 0 374
ENST00000440114 HSPD1-007 nonsense_mediated_decay Homo_sapiens 0 612
ENST00000447985 HSPD1P7-001 processed_pseudogene Homo_sapiens 0 1541
ENST00000452200 HSPD1-006 protein_coding Homo_sapiens 0 944
ENST00000461097 HSPD1-014 retained_intron Homo_sapiens 0 638
ENST00000476746 HSPD1-008 retained_intron Homo_sapiens 0 819
ENST00000482167 HSPD1-004 retained_intron Homo_sapiens 0 326
ENST00000486181 HSPD1-005 retained_intron Homo_sapiens 0 736
ENST00000491249 HSPD1-003 retained_intron Homo_sapiens 0 761
ENST00000503199 HSPD1P1-001 processed_pseudogene Homo_sapiens 0 2170
ENST00000508643 HSPD1P11-001 processed_pseudogene Homo_sapiens 0 710
ENST00000511127 HSPD1P5-001 processed_pseudogene Homo_sapiens 0 2002
ENST00000530524 HSPD1P2-001 processed_pseudogene Homo_sapiens 0 1681
ENST00000533477 HSPD1P3-001 processed_pseudogene Homo_sapiens 0 1664
ENST00000547203 RP11-153M3.1-001 processed_pseudogene Homo_sapiens 0 2104

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