C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 50
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000532878 NPM1P50-001 ENSG00000213333 9606 - 11:75079265-75080131 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMusclePlacentaTestisENST00000532878
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Placenta Testis
ENST00000532878 0.025±0.00 0.068±0.00 0.013±0.00 0.026±0.00 0.024±0.00 0.012±0.00 0.291±0.00 0.013±0.00 0.036±0.00 0.012±0.00 0.099±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I3 CIL_0008I3_0001 VISTA 11:74770295-75374240

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 905
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 743
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 741
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 695
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 512
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 7e-39 165
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 252
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 496

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