C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000534211 RP11-140L24.3-001 ENSG00000255074 9606 + 11:14440787-14441677 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleTestisENST00000534211
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Testis
ENST00000534211 0.192±0.00 0.422±0.00 0.046±0.00 0.090±0.00 0.246±0.00 0.039±0.00 0.305±0.00 0.191±0.00 0.393±0.00 0.293±0.00 0.103±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PN CIL_0003PN_0001 CGP 11:14277926-14500027

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117851 Gm11478-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000124300 Rpl13a-011 protein_coding Mus_musculus 0 392
ENSMUST00000150350 Rpl13a-001 protein_coding Mus_musculus 0 392
ENSMUST00000071866 Rpl13a-ps1-201 protein_coding Mus_musculus 0 342
ENSMUST00000102669 Rpl13a-009 nonsense_mediated_decay Mus_musculus 0 329
ENSMUST00000125074 Rpl13a-006 processed_transcript Mus_musculus 0 327
ENSMUST00000138887 Rpl13a-007 retained_intron Mus_musculus 0 195
ENSMUST00000152970 Rpl13a-003 retained_intron Mus_musculus 1e-29 134
ENSMUST00000142239 Rpl13a-010 processed_transcript Mus_musculus 2e-22 110

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