C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lactate dehydrogenase A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543695 LDHA-015 ENSG00000134333 9606 + 11:18394563-18403759 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000445 CIL_000445_0001 CGP 11:18322295-18408425
CIL_000369 CIL_000369_0001 CGP 11:18394388-18452058

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016616 IEA oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0044262 IEA cellular carbohydrate metabolic process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005051 Ldha-002 protein_coding Mus_musculus 0 340
ENSMUST00000092621 Ldha-006 protein_coding Mus_musculus 0 340
ENSMUST00000048209 Ldha-001 protein_coding Mus_musculus 0 340
ENSMUST00000147535 Ldha-003 protein_coding Mus_musculus 0 340
ENSMUST00000119390 Ldha-ps-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000118722 Ldha-ps2-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000188353 RP24-77I21.1-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000121188 Gm13365-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000187574 RP23-251N10.2-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000132157 Ldha-008 retained_intron Mus_musculus 0 230
ENSMUST00000133062 Ldha-007 processed_transcript Mus_musculus 3e-36 156
ENSMUST00000125862 Ldha-004 processed_transcript Mus_musculus 3e-36 156
ENSMUST00000124696 Ldha-005 retained_intron Mus_musculus 3e-36 156
ENSMUST00000119515 Gm11814-001 processed_pseudogene Mus_musculus 4e-34 148
ENSMUST00000117722 Gm14676-001 processed_pseudogene Mus_musculus 2e-23 113

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