C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lactate dehydrogenase A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048209 Ldha-001 ENSMUSG00000063229 10090 + 7:46845839-46855627 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048209
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048209 556.530±124.01 156.780±24.96 159.968±8.40 75.984±35.16 787.375±305.56 497.340±46.86 339.993±19.73 317.029±14.57 459.743±208.86 173.193±21.61 1404.629±78.11 235.916±63.92 369.288±196.12 52.193±23.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000445 CIL_000445_0002 CGP 7:46796103-46855627
CIL_000369 CIL_000369_0002 CGP 7:46841475-46878142

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004459 IMP L-lactate dehydrogenase activity
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0005829 IDA cytosol
GO:0019244 IC lactate biosynthetic process from pyruvate
GO:0031668 IDA cellular response to extracellular stimulus
GO:0035686 IDA sperm fibrous sheath
GO:0044262 IEA cellular carbohydrate metabolic process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000227157 LDHA-003 protein_coding Homo_sapiens 0 782
ENST00000375710 LDHA-023 retained_intron Homo_sapiens 0 804
ENST00000379412 LDHA-005 protein_coding Homo_sapiens 0 1120
ENST00000394996 LDHAP5-001 processed_pseudogene Homo_sapiens 0 586
ENST00000396222 LDHA-002 protein_coding Homo_sapiens 0 750
ENST00000397561 LDHAP4-001 processed_pseudogene Homo_sapiens 0 950
ENST00000398295 LDHAP7-001 processed_pseudogene Homo_sapiens 0 702
ENST00000422447 LDHA-001 protein_coding Homo_sapiens 0 1120
ENST00000430553 LDHA-010 protein_coding Homo_sapiens 0 643
ENST00000448312 LDHAP3-001 processed_pseudogene Homo_sapiens 0 863
ENST00000460405 LDHA-008 retained_intron Homo_sapiens 0 569
ENST00000469976 LDHA-006 retained_intron Homo_sapiens 5.04467e-44 182
ENST00000478970 LDHA-009 protein_coding Homo_sapiens 0 481
ENST00000486690 LDHA-017 nonsense_mediated_decay Homo_sapiens 0 521
ENST00000494573 LDHA-007 retained_intron Homo_sapiens 0 320
ENST00000495052 LDHA-004 protein_coding Homo_sapiens 0 427
ENST00000535451 LDHA-014 protein_coding Homo_sapiens 0 292
ENST00000536528 LDHA-021 nonsense_mediated_decay Homo_sapiens 0 305
ENST00000537296 LDHA-022 retained_intron Homo_sapiens 0 760
ENST00000538451 LDHA-024 retained_intron Homo_sapiens 0 643
ENST00000539814 LDHA-016 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000540430 LDHA-201 protein_coding Homo_sapiens 0 1120
ENST00000541097 LDHA-019 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000542179 LDHA-020 protein_coding Homo_sapiens 0 1088
ENST00000543445 LDHA-013 protein_coding Homo_sapiens 0 560
ENST00000543695 LDHA-015 nonsense_mediated_decay Homo_sapiens 0 340
ENST00000545215 LDHA-011 nonsense_mediated_decay Homo_sapiens 0 806
ENST00000545467 LDHA-018 nonsense_mediated_decay Homo_sapiens 2.00386e-43 180

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