C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lactate dehydrogenase A, pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119390 Ldha-ps-001 ENSMUSG00000082330 10090 + 2:60134055-60135049 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMusclePlacentaTestisENSMUST00000119390
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENSMUST00000119390 0.065±0.02 0.110±0.01 0.017±0.00 0.081±0.04 0.088±0.00 0.081±0.01 0.047±0.02 0.067±0.03 0.027±0.02 0.073±0.02 0.028±0.00 0.022±0.00 0.072±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U2 CIL_0005U2_0002 CGP 2:59852364-60209839
CIL_0005U1 CIL_0005U1_0002 CGP 2:59899363-60250676

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000227157 LDHA-003 protein_coding Homo_sapiens 0 682
ENST00000375710 LDHA-023 retained_intron Homo_sapiens 0 665
ENST00000379412 LDHA-005 protein_coding Homo_sapiens 0 922
ENST00000394996 LDHAP5-001 processed_pseudogene Homo_sapiens 0 547
ENST00000396222 LDHA-002 protein_coding Homo_sapiens 0 651
ENST00000397561 LDHAP4-001 processed_pseudogene Homo_sapiens 0 835
ENST00000398295 LDHAP7-001 processed_pseudogene Homo_sapiens 0 601
ENST00000422447 LDHA-001 protein_coding Homo_sapiens 0 922
ENST00000430553 LDHA-010 protein_coding Homo_sapiens 0 529
ENST00000460405 LDHA-008 retained_intron Homo_sapiens 0 512
ENST00000469976 LDHA-006 retained_intron Homo_sapiens 1e-30 137
ENST00000478970 LDHA-009 protein_coding Homo_sapiens 0 398
ENST00000486690 LDHA-017 nonsense_mediated_decay Homo_sapiens 0 449
ENST00000494573 LDHA-007 retained_intron Homo_sapiens 0 259
ENST00000495052 LDHA-004 protein_coding Homo_sapiens 0 350
ENST00000535451 LDHA-014 protein_coding Homo_sapiens 0 237
ENST00000536528 LDHA-021 nonsense_mediated_decay Homo_sapiens 0 289
ENST00000537296 LDHA-022 retained_intron Homo_sapiens 0 647
ENST00000538451 LDHA-024 retained_intron Homo_sapiens 0 529
ENST00000539814 LDHA-016 nonsense_mediated_decay Homo_sapiens 0 259
ENST00000540430 LDHA-201 protein_coding Homo_sapiens 0 922
ENST00000541097 LDHA-019 nonsense_mediated_decay Homo_sapiens 0 265
ENST00000542179 LDHA-020 protein_coding Homo_sapiens 0 922
ENST00000543445 LDHA-013 protein_coding Homo_sapiens 0 470
ENST00000543695 LDHA-015 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000545215 LDHA-011 nonsense_mediated_decay Homo_sapiens 0 667
ENST00000545467 LDHA-018 nonsense_mediated_decay Homo_sapiens 3e-30 135

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