C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lactate dehydrogenase A, pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118722 Ldha-ps2-001 ENSMUSG00000083836 10090 - 4:119334389-119335445 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118722
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118722 0.216±0.06 0.202±0.09 0.059±0.02 0.400±0.18 0.297±0.28 0.195±0.11 0.219±0.10 0.168±0.07 0.255±0.21 0.187±0.10 0.191±0.09 0.292±0.15 0.310±0.43 1.104±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0002 VISTA 4:118938785-119540197

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000227157 LDHA-003 protein_coding Homo_sapiens 0 682
ENST00000375710 LDHA-023 retained_intron Homo_sapiens 0 536
ENST00000379412 LDHA-005 protein_coding Homo_sapiens 0 822
ENST00000394996 LDHAP5-001 processed_pseudogene Homo_sapiens 0 416
ENST00000396222 LDHA-002 protein_coding Homo_sapiens 0 656
ENST00000397561 LDHAP4-001 processed_pseudogene Homo_sapiens 0 725
ENST00000398295 LDHAP7-001 processed_pseudogene Homo_sapiens 6e-35 152
ENST00000422447 LDHA-001 protein_coding Homo_sapiens 0 822
ENST00000430553 LDHA-010 protein_coding Homo_sapiens 0 444
ENST00000460405 LDHA-008 retained_intron Homo_sapiens 0 496
ENST00000469976 LDHA-006 retained_intron Homo_sapiens 2e-38 163
ENST00000478970 LDHA-009 protein_coding Homo_sapiens 0 383
ENST00000486690 LDHA-017 nonsense_mediated_decay Homo_sapiens 0 435
ENST00000494573 LDHA-007 retained_intron Homo_sapiens 0 291
ENST00000495052 LDHA-004 protein_coding Homo_sapiens 0 346
ENST00000535451 LDHA-014 protein_coding Homo_sapiens 0 268
ENST00000536528 LDHA-021 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000537296 LDHA-022 retained_intron Homo_sapiens 0 662
ENST00000538451 LDHA-024 retained_intron Homo_sapiens 0 444
ENST00000539814 LDHA-016 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000540430 LDHA-201 protein_coding Homo_sapiens 0 822
ENST00000541097 LDHA-019 nonsense_mediated_decay Homo_sapiens 0 296
ENST00000542179 LDHA-020 protein_coding Homo_sapiens 0 822
ENST00000543445 LDHA-013 protein_coding Homo_sapiens 0 457
ENST00000543695 LDHA-015 nonsense_mediated_decay Homo_sapiens 0 305
ENST00000545215 LDHA-011 nonsense_mediated_decay Homo_sapiens 0 538
ENST00000545467 LDHA-018 nonsense_mediated_decay Homo_sapiens 6e-38 161

Loading